Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 VN2R19P-201ENST00000442399 1052 ntBASIC17.59■□□□□ 0.41
PTPN9P43378 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.59■□□□□ 0.41
PTPN9P43378 AC079776.4-201ENST00000511039 504 ntBASIC17.59■□□□□ 0.41
PTPN9P43378 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PTPN9P43378 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.59■□□□□ 0.41
PTPN9P43378 ACTL9-202ENST00000612068 1252 ntBASIC17.59■□□□□ 0.41
PTPN9P43378 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PTPN9P43378 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTPN9P43378 HLA-A-202ENST00000376806 1854 ntBASIC17.58■□□□□ 0.41
PTPN9P43378 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.58■□□□□ 0.41
PTPN9P43378 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.58■□□□□ 0.41
PTPN9P43378 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PTPN9P43378 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.58■□□□□ 0.41
PTPN9P43378 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTPN9P43378 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN9P43378 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.58■□□□□ 0.4
PTPN9P43378 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.58■□□□□ 0.4
PTPN9P43378 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.58■□□□□ 0.4
PTPN9P43378 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN9P43378 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN9P43378 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.58■□□□□ 0.4
PTPN9P43378 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN9P43378 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN9P43378 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN9P43378 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.58■□□□□ 0.4
PTPN9P43378 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.58■□□□□ 0.4
PTPN9P43378 SNX33P1-201ENST00000592116 1762 ntBASIC17.58■□□□□ 0.4
PTPN9P43378 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN9P43378 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN9P43378 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PTPN9P43378 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PTPN9P43378 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.57■□□□□ 0.4
PTPN9P43378 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.57■□□□□ 0.4
PTPN9P43378 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN9P43378 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN9P43378 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN9P43378 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.57■□□□□ 0.4
PTPN9P43378 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 IL9RP2-201ENST00000423948 1312 ntBASIC17.57■□□□□ 0.4
PTPN9P43378 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN9P43378 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
PTPN9P43378 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PTPN9P43378 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
PTPN9P43378 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN9P43378 CRYGEP-201ENST00000412192 528 ntBASIC17.57■□□□□ 0.4
PTPN9P43378 IGLL3P-201ENST00000412472 434 ntBASIC17.57■□□□□ 0.4
PTPN9P43378 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PTPN9P43378 CXCL1P1-201ENST00000502804 216 ntBASIC17.57■□□□□ 0.4
PTPN9P43378 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN9P43378 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PTPN9P43378 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.57■□□□□ 0.4
PTPN9P43378 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.57■□□□□ 0.4
PTPN9P43378 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.57■□□□□ 0.4
PTPN9P43378 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN9P43378 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PTPN9P43378 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.57■□□□□ 0.4
PTPN9P43378 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
PTPN9P43378 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 AC006538.1-201ENST00000567905 1585 ntBASIC17.57■□□□□ 0.4
PTPN9P43378 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
PTPN9P43378 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN9P43378 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.56■□□□□ 0.4
PTPN9P43378 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN9P43378 HCG4B-203ENST00000450128 991 ntBASIC17.56■□□□□ 0.4
PTPN9P43378 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.56■□□□□ 0.4
PTPN9P43378 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.56■□□□□ 0.4
PTPN9P43378 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms