Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.74■□□□□ 0.59
HTTP42858 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC18.74■□□□□ 0.59
HTTP42858 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.74■□□□□ 0.59
HTTP42858 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.74■□□□□ 0.59
HTTP42858 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.74■□□□□ 0.59
HTTP42858 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.74■□□□□ 0.59
HTTP42858 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 AL589987.1-201ENST00000453380 819 ntBASIC18.74■□□□□ 0.59
HTTP42858 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.74■□□□□ 0.59
HTTP42858 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.74■□□□□ 0.59
HTTP42858 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC18.74■□□□□ 0.59
HTTP42858 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HTTP42858 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.73■□□□□ 0.59
HTTP42858 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HTTP42858 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.73■□□□□ 0.59
HTTP42858 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HTTP42858 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HTTP42858 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.73■□□□□ 0.59
HTTP42858 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.73■□□□□ 0.59
HTTP42858 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HTTP42858 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC18.73■□□□□ 0.59
HTTP42858 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
HTTP42858 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC18.73■□□□□ 0.59
HTTP42858 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HTTP42858 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HTTP42858 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.73■□□□□ 0.59
HTTP42858 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
HTTP42858 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.73■□□□□ 0.59
HTTP42858 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
HTTP42858 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HTTP42858 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
HTTP42858 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC18.73■□□□□ 0.59
HTTP42858 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC18.73■□□□□ 0.59
HTTP42858 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
HTTP42858 AC243960.2-201ENST00000600996 747 ntBASIC18.73■□□□□ 0.59
HTTP42858 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.73■□□□□ 0.59
HTTP42858 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
HTTP42858 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC18.72■□□□□ 0.59
HTTP42858 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
HTTP42858 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
HTTP42858 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
HTTP42858 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.72■□□□□ 0.59
HTTP42858 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 MPV17-206ENST00000402722 827 ntTSL 3 BASIC18.72■□□□□ 0.59
HTTP42858 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 C2orf69P2-201ENST00000562032 1123 ntBASIC18.72■□□□□ 0.59
HTTP42858 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.72■□□□□ 0.59
HTTP42858 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC18.72■□□□□ 0.59
HTTP42858 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC18.72■□□□□ 0.59
HTTP42858 MIR6727-201ENST00000620702 65 ntBASIC18.72■□□□□ 0.59
HTTP42858 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
HTTP42858 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HTTP42858 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
HTTP42858 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC18.72■□□□□ 0.59
HTTP42858 COG4-212ENST00000564653 590 ntTSL 5 BASIC18.72■□□□□ 0.59
HTTP42858 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC18.72■□□□□ 0.59
HTTP42858 AL139327.4-201ENST00000612362 153 ntBASIC18.72■□□□□ 0.59
HTTP42858 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
HTTP42858 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.71■□□□□ 0.59
HTTP42858 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
HTTP42858 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.71■□□□□ 0.59
HTTP42858 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.71■□□□□ 0.59
HTTP42858 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.71■□□□□ 0.59
HTTP42858 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
HTTP42858 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.71■□□□□ 0.59
HTTP42858 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.71■□□□□ 0.59
HTTP42858 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HTTP42858 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.71■□□□□ 0.59
HTTP42858 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.71■□□□□ 0.59
HTTP42858 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.71■□□□□ 0.59
HTTP42858 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC18.71■□□□□ 0.59
HTTP42858 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms