Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
BRCA1P38398 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
BRCA1P38398 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC20.24■□□□□ 0.83
BRCA1P38398 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC20.24■□□□□ 0.83
BRCA1P38398 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 MEP1AP4-201ENST00000423244 1087 ntBASIC20.24■□□□□ 0.83
BRCA1P38398 WDR53-204ENST00000433160 887 ntTSL 5 BASIC20.24■□□□□ 0.83
BRCA1P38398 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC20.24■□□□□ 0.83
BRCA1P38398 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC20.24■□□□□ 0.83
BRCA1P38398 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC20.24■□□□□ 0.83
BRCA1P38398 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
BRCA1P38398 AC243960.2-201ENST00000600996 747 ntBASIC20.24■□□□□ 0.83
BRCA1P38398 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC20.24■□□□□ 0.83
BRCA1P38398 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
BRCA1P38398 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
BRCA1P38398 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRCA1P38398 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC20.23■□□□□ 0.83
BRCA1P38398 BRWD1P1-201ENST00000401091 371 ntBASIC20.23■□□□□ 0.83
BRCA1P38398 MPV17-206ENST00000402722 827 ntTSL 3 BASIC20.23■□□□□ 0.83
BRCA1P38398 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC20.23■□□□□ 0.83
BRCA1P38398 USB1-202ENST00000423271 1217 ntTSL 2 BASIC20.23■□□□□ 0.83
BRCA1P38398 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC20.23■□□□□ 0.83
BRCA1P38398 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
BRCA1P38398 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC20.23■□□□□ 0.83
BRCA1P38398 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
BRCA1P38398 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
BRCA1P38398 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC20.23■□□□□ 0.83
BRCA1P38398 AC024267.1-201ENST00000582320 895 ntBASIC20.23■□□□□ 0.83
BRCA1P38398 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
BRCA1P38398 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BRCA1P38398 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
BRCA1P38398 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRCA1P38398 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRCA1P38398 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BRCA1P38398 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
BRCA1P38398 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRCA1P38398 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC20.22■□□□□ 0.83
BRCA1P38398 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC20.22■□□□□ 0.83
BRCA1P38398 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
BRCA1P38398 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC20.22■□□□□ 0.83
BRCA1P38398 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC20.22■□□□□ 0.83
BRCA1P38398 PARP8-206ENST00000503665 572 ntTSL 4 BASIC20.22■□□□□ 0.83
BRCA1P38398 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC20.22■□□□□ 0.83
BRCA1P38398 FADS2-205ENST00000517839 469 ntTSL 3 BASIC20.22■□□□□ 0.83
BRCA1P38398 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC20.22■□□□□ 0.83
BRCA1P38398 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC20.22■□□□□ 0.83
BRCA1P38398 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC20.22■□□□□ 0.83
BRCA1P38398 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.22■□□□□ 0.83
BRCA1P38398 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
BRCA1P38398 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
BRCA1P38398 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.22■□□□□ 0.83
BRCA1P38398 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.22■□□□□ 0.83
BRCA1P38398 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 SPDYE17-201ENST00000412399 783 ntBASIC20.22■□□□□ 0.83
BRCA1P38398 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC20.22■□□□□ 0.83
BRCA1P38398 AL162726.2-201ENST00000438986 1017 ntBASIC20.22■□□□□ 0.83
BRCA1P38398 AC093724.1-201ENST00000448659 1027 ntBASIC20.22■□□□□ 0.83
BRCA1P38398 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC20.22■□□□□ 0.83
BRCA1P38398 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
BRCA1P38398 AGER-214ENST00000538695 487 ntTSL 2 BASIC20.22■□□□□ 0.83
BRCA1P38398 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC20.22■□□□□ 0.83
BRCA1P38398 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC20.22■□□□□ 0.83
BRCA1P38398 DERL2-202ENST00000570848 657 ntTSL 5 BASIC20.22■□□□□ 0.83
BRCA1P38398 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 AL033527.5-201ENST00000641382 801 ntBASIC20.22■□□□□ 0.83
BRCA1P38398 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRCA1P38398 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.22■□□□□ 0.83
BRCA1P38398 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
BRCA1P38398 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC20.21■□□□□ 0.83
BRCA1P38398 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRCA1P38398 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
BRCA1P38398 LBX2-201ENST00000341396 886 ntTSL 3 BASIC20.21■□□□□ 0.83
BRCA1P38398 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC20.21■□□□□ 0.83
BRCA1P38398 FAM21FP-201ENST00000426241 1131 ntBASIC20.21■□□□□ 0.83
BRCA1P38398 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
BRCA1P38398 RIT1-205ENST00000539040 919 ntTSL 2 BASIC20.21■□□□□ 0.83
BRCA1P38398 C2orf69P2-201ENST00000562032 1123 ntBASIC20.21■□□□□ 0.83
BRCA1P38398 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC20.21■□□□□ 0.83
BRCA1P38398 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms