Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.69■□□□□ 0.74
SCN4AP35499 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN4AP35499 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SCN4AP35499 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN4AP35499 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SCN4AP35499 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC19.69■□□□□ 0.74
SCN4AP35499 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC19.69■□□□□ 0.74
SCN4AP35499 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC19.69■□□□□ 0.74
SCN4AP35499 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC19.69■□□□□ 0.74
SCN4AP35499 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SCN4AP35499 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.69■□□□□ 0.74
SCN4AP35499 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.69■□□□□ 0.74
SCN4AP35499 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
SCN4AP35499 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN4AP35499 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.68■□□□□ 0.74
SCN4AP35499 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC19.68■□□□□ 0.74
SCN4AP35499 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN4AP35499 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN4AP35499 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC19.68■□□□□ 0.74
SCN4AP35499 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC19.68■□□□□ 0.74
SCN4AP35499 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC19.68■□□□□ 0.74
SCN4AP35499 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.68■□□□□ 0.74
SCN4AP35499 RHOQP1-201ENST00000555758 579 ntBASIC19.68■□□□□ 0.74
SCN4AP35499 EMC4-209ENST00000559421 497 ntTSL 2 BASIC19.68■□□□□ 0.74
SCN4AP35499 AC243960.2-201ENST00000600996 747 ntBASIC19.68■□□□□ 0.74
SCN4AP35499 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SCN4AP35499 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN4AP35499 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SCN4AP35499 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SCN4AP35499 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN4AP35499 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN4AP35499 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
SCN4AP35499 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SCN4AP35499 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN4AP35499 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.68■□□□□ 0.74
SCN4AP35499 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN4AP35499 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC19.68■□□□□ 0.74
SCN4AP35499 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SCN4AP35499 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN4AP35499 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN4AP35499 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SCN4AP35499 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.68■□□□□ 0.74
SCN4AP35499 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC19.67■□□□□ 0.74
SCN4AP35499 AL162726.2-201ENST00000438986 1017 ntBASIC19.67■□□□□ 0.74
SCN4AP35499 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 ZNF767P-206ENST00000513792 565 ntBASIC19.67■□□□□ 0.74
SCN4AP35499 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC19.67■□□□□ 0.74
SCN4AP35499 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC19.67■□□□□ 0.74
SCN4AP35499 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC19.67■□□□□ 0.74
SCN4AP35499 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC19.67■□□□□ 0.74
SCN4AP35499 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC19.67■□□□□ 0.74
SCN4AP35499 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC19.67■□□□□ 0.74
SCN4AP35499 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC19.67■□□□□ 0.74
SCN4AP35499 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SCN4AP35499 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SCN4AP35499 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.67■□□□□ 0.74
SCN4AP35499 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SCN4AP35499 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC19.67■□□□□ 0.74
SCN4AP35499 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 KLF2P4-201ENST00000451959 1225 ntBASIC19.67■□□□□ 0.74
SCN4AP35499 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC19.67■□□□□ 0.74
SCN4AP35499 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.67■□□□□ 0.74
SCN4AP35499 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN4AP35499 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SCN4AP35499 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.66■□□□□ 0.74
SCN4AP35499 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SCN4AP35499 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SCN4AP35499 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
SCN4AP35499 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SCN4AP35499 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.66■□□□□ 0.74
SCN4AP35499 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.66■□□□□ 0.74
SCN4AP35499 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SCN4AP35499 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SCN4AP35499 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SCN4AP35499 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SCN4AP35499 SPDYE17-201ENST00000412399 783 ntBASIC19.66■□□□□ 0.74
SCN4AP35499 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC19.66■□□□□ 0.74
SCN4AP35499 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC19.66■□□□□ 0.74
SCN4AP35499 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC19.66■□□□□ 0.74
SCN4AP35499 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC19.66■□□□□ 0.74
SCN4AP35499 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.66■□□□□ 0.74
SCN4AP35499 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SCN4AP35499 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SCN4AP35499 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SCN4AP35499 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SCN4AP35499 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SCN4AP35499 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms