Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CSB-PGBD3P0DP91 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CSB-PGBD3P0DP91 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CSB-PGBD3P0DP91 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CSB-PGBD3P0DP91 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CSB-PGBD3P0DP91 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC22.3■■□□□ 1.16
CSB-PGBD3P0DP91 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CSB-PGBD3P0DP91 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CSB-PGBD3P0DP91 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 NOP2-220ENST00000545915 630 ntTSL 2 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
CSB-PGBD3P0DP91 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 CALY-202ENST00000368555 783 ntTSL 2 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 HLA-V-204ENST00000476601 1289 ntBASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 REEP4-207ENST00000523293 913 ntTSL 3 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 SSH2-210ENST00000582084 560 ntTSL 3 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 LINC00896-202ENST00000609602 2128 ntBASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
CSB-PGBD3P0DP91 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 BICD1-207ENST00000551848 1962 ntBASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 STOM-203ENST00000538954 1257 ntTSL 5 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 CDK4-206ENST00000549606 558 ntTSL 2 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 GPER1-207ENST00000619052 571 ntTSL 2 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC22.27■■□□□ 1.16
CSB-PGBD3P0DP91 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
CSB-PGBD3P0DP91 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC22.27■■□□□ 1.15
CSB-PGBD3P0DP91 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CSB-PGBD3P0DP91 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CSB-PGBD3P0DP91 AC093525.9-201ENST00000624961 1746 ntBASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms