Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC17.09■□□□□ 0.33
VIMP08670 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
VIMP08670 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.09■□□□□ 0.33
VIMP08670 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.09■□□□□ 0.33
VIMP08670 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VIMP08670 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
VIMP08670 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
VIMP08670 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
VIMP08670 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VIMP08670 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 MIR600HG-201ENST00000449175 5984 ntBASIC17.08■□□□□ 0.33
VIMP08670 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
VIMP08670 AL161772.1-201ENST00000610494 4412 ntBASIC17.08■□□□□ 0.33
VIMP08670 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VIMP08670 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
VIMP08670 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VIMP08670 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VIMP08670 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VIMP08670 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VIMP08670 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.08■□□□□ 0.33
VIMP08670 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VIMP08670 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
VIMP08670 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VIMP08670 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.32
VIMP08670 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.08■□□□□ 0.32
VIMP08670 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.08■□□□□ 0.32
VIMP08670 AC007326.2-201ENST00000624224 7579 ntBASIC17.08■□□□□ 0.32
VIMP08670 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
VIMP08670 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.08■□□□□ 0.32
VIMP08670 AP002490.2-201ENST00000524791 560 ntBASIC17.08■□□□□ 0.32
VIMP08670 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.08■□□□□ 0.32
VIMP08670 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.08■□□□□ 0.32
VIMP08670 LINC02228-204ENST00000642115 2962 ntBASIC17.08■□□□□ 0.32
VIMP08670 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.08■□□□□ 0.32
VIMP08670 C1R-202ENST00000536053 2347 ntTSL 2 BASIC17.08■□□□□ 0.32
VIMP08670 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VIMP08670 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
VIMP08670 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
VIMP08670 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.07■□□□□ 0.32
VIMP08670 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
VIMP08670 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC17.07■□□□□ 0.32
VIMP08670 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
VIMP08670 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 MYCLP1-201ENST00000372451 1075 ntBASIC17.07■□□□□ 0.32
VIMP08670 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
VIMP08670 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.07■□□□□ 0.32
VIMP08670 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.07■□□□□ 0.32
VIMP08670 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.07■□□□□ 0.32
VIMP08670 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.07■□□□□ 0.32
VIMP08670 AC024563.2-201ENST00000603282 481 ntBASIC17.07■□□□□ 0.32
VIMP08670 AL157888.1-201ENST00000631930 593 ntBASIC17.07■□□□□ 0.32
VIMP08670 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
VIMP08670 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.07■□□□□ 0.32
VIMP08670 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.07■□□□□ 0.32
VIMP08670 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms