Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.46■□□□□ 0.87
COL4A1P02462 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC20.46■□□□□ 0.87
COL4A1P02462 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.46■□□□□ 0.87
COL4A1P02462 AC025048.6-201ENST00000634326 1161 ntBASIC20.46■□□□□ 0.87
COL4A1P02462 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A1P02462 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.46■□□□□ 0.87
COL4A1P02462 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A1P02462 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A1P02462 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
COL4A1P02462 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A1P02462 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A1P02462 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 MPI-209ENST00000564003 1195 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A1P02462 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
COL4A1P02462 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A1P02462 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC20.45■□□□□ 0.86
COL4A1P02462 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
COL4A1P02462 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A1P02462 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
COL4A1P02462 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC20.45■□□□□ 0.86
COL4A1P02462 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.45■□□□□ 0.86
COL4A1P02462 PP14571-201ENST00000404327 934 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A1P02462 RPL37AP1-201ENST00000412502 279 ntBASIC20.45■□□□□ 0.86
COL4A1P02462 COX5BP8-201ENST00000416911 349 ntBASIC20.45■□□□□ 0.86
COL4A1P02462 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A1P02462 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A1P02462 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.45■□□□□ 0.86
COL4A1P02462 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
COL4A1P02462 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.45■□□□□ 0.86
COL4A1P02462 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC20.45■□□□□ 0.86
COL4A1P02462 CECR7-204ENST00000609932 568 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A1P02462 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC20.44■□□□□ 0.86
COL4A1P02462 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
COL4A1P02462 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC20.44■□□□□ 0.86
COL4A1P02462 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC20.44■□□□□ 0.86
COL4A1P02462 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.44■□□□□ 0.86
COL4A1P02462 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL4A1P02462 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
COL4A1P02462 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
COL4A1P02462 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
COL4A1P02462 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 HLA-H-201ENST00000383620 1096 ntBASIC20.44■□□□□ 0.86
COL4A1P02462 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.44■□□□□ 0.86
COL4A1P02462 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC20.44■□□□□ 0.86
COL4A1P02462 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
COL4A1P02462 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.44■□□□□ 0.86
COL4A1P02462 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC20.44■□□□□ 0.86
COL4A1P02462 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
COL4A1P02462 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A1P02462 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.44■□□□□ 0.86
COL4A1P02462 AC120498.9-201ENST00000339021 3867 ntBASIC20.43■□□□□ 0.86
COL4A1P02462 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A1P02462 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.43■□□□□ 0.86
COL4A1P02462 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.43■□□□□ 0.86
COL4A1P02462 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A1P02462 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC20.43■□□□□ 0.86
COL4A1P02462 GAPDHP21-201ENST00000450301 1010 ntBASIC20.43■□□□□ 0.86
COL4A1P02462 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC20.43■□□□□ 0.86
COL4A1P02462 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.43■□□□□ 0.86
COL4A1P02462 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.43■□□□□ 0.86
COL4A1P02462 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC20.43■□□□□ 0.86
COL4A1P02462 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.43■□□□□ 0.86
COL4A1P02462 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A1P02462 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
COL4A1P02462 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
COL4A1P02462 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
COL4A1P02462 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC20.42■□□□□ 0.86
COL4A1P02462 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC20.42■□□□□ 0.86
COL4A1P02462 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A1P02462 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A1P02462 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A1P02462 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC20.42■□□□□ 0.86
COL4A1P02462 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.42■□□□□ 0.86
COL4A1P02462 LY6E-204ENST00000519546 971 ntTSL 2 BASIC20.42■□□□□ 0.86
COL4A1P02462 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms