Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.21■□□□□ 0.83
COL1A1P02452 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC20.21■□□□□ 0.83
COL1A1P02452 PPP6R2P1-201ENST00000450880 1275 ntBASIC20.21■□□□□ 0.83
COL1A1P02452 UGT1A2P-201ENST00000454886 866 ntBASIC20.21■□□□□ 0.83
COL1A1P02452 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC20.21■□□□□ 0.83
COL1A1P02452 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC20.21■□□□□ 0.83
COL1A1P02452 NKG7-205ENST00000600427 520 ntTSL 3 BASIC20.21■□□□□ 0.83
COL1A1P02452 AL390754.1-201ENST00000619088 582 ntBASIC20.21■□□□□ 0.83
COL1A1P02452 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC20.21■□□□□ 0.83
COL1A1P02452 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
COL1A1P02452 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC20.21■□□□□ 0.83
COL1A1P02452 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL1A1P02452 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.2■□□□□ 0.82
COL1A1P02452 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
COL1A1P02452 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
COL1A1P02452 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC20.2■□□□□ 0.82
COL1A1P02452 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC20.2■□□□□ 0.82
COL1A1P02452 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 IGHV3-62-201ENST00000520057 340 ntBASIC20.2■□□□□ 0.82
COL1A1P02452 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC20.2■□□□□ 0.82
COL1A1P02452 AC021097.1-201ENST00000607902 574 ntBASIC20.2■□□□□ 0.82
COL1A1P02452 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.2■□□□□ 0.82
COL1A1P02452 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.2■□□□□ 0.82
COL1A1P02452 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COL1A1P02452 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
COL1A1P02452 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC20.2■□□□□ 0.82
COL1A1P02452 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL1A1P02452 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.19■□□□□ 0.82
COL1A1P02452 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL1A1P02452 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.19■□□□□ 0.82
COL1A1P02452 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC20.19■□□□□ 0.82
COL1A1P02452 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL1A1P02452 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL1A1P02452 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL1A1P02452 HNRNPA1P40-201ENST00000426371 1278 ntBASIC20.19■□□□□ 0.82
COL1A1P02452 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC20.19■□□□□ 0.82
COL1A1P02452 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
COL1A1P02452 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL1A1P02452 ALG1L8P-201ENST00000533887 760 ntBASIC20.19■□□□□ 0.82
COL1A1P02452 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC20.19■□□□□ 0.82
COL1A1P02452 AC073389.1-201ENST00000595595 795 ntBASIC20.19■□□□□ 0.82
COL1A1P02452 MIR6080-201ENST00000617359 66 ntBASIC20.19■□□□□ 0.82
COL1A1P02452 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL1A1P02452 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL1A1P02452 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
COL1A1P02452 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL1A1P02452 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL1A1P02452 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL1A1P02452 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL1A1P02452 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL1A1P02452 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC20.19■□□□□ 0.82
COL1A1P02452 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC20.19■□□□□ 0.82
COL1A1P02452 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.19■□□□□ 0.82
COL1A1P02452 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.19■□□□□ 0.82
COL1A1P02452 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC20.19■□□□□ 0.82
COL1A1P02452 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
COL1A1P02452 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL1A1P02452 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC20.18■□□□□ 0.82
COL1A1P02452 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL1A1P02452 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL1A1P02452 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.18■□□□□ 0.82
COL1A1P02452 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC20.18■□□□□ 0.82
COL1A1P02452 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC20.18■□□□□ 0.82
COL1A1P02452 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC20.18■□□□□ 0.82
COL1A1P02452 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.18■□□□□ 0.82
COL1A1P02452 GAPDHP21-201ENST00000450301 1010 ntBASIC20.18■□□□□ 0.82
COL1A1P02452 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.18■□□□□ 0.82
COL1A1P02452 AC069120.2-201ENST00000524091 540 ntBASIC20.18■□□□□ 0.82
COL1A1P02452 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL1A1P02452 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL1A1P02452 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL1A1P02452 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC20.18■□□□□ 0.82
COL1A1P02452 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC20.18■□□□□ 0.82
COL1A1P02452 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC20.18■□□□□ 0.82
COL1A1P02452 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.18■□□□□ 0.82
COL1A1P02452 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
COL1A1P02452 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.18■□□□□ 0.82
COL1A1P02452 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL1A1P02452 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL1A1P02452 PCDHB18P-201ENST00000524813 2368 ntBASIC20.18■□□□□ 0.82
COL1A1P02452 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms