Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.28■□□□□ 0.2
SEMA3DO95025 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.28■□□□□ 0.2
SEMA3DO95025 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.28■□□□□ 0.2
SEMA3DO95025 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.28■□□□□ 0.2
SEMA3DO95025 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.28■□□□□ 0.2
SEMA3DO95025 AC021087.4-201ENST00000563761 564 ntBASIC16.28■□□□□ 0.2
SEMA3DO95025 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.28■□□□□ 0.2
SEMA3DO95025 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.28■□□□□ 0.2
SEMA3DO95025 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.28■□□□□ 0.2
SEMA3DO95025 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.28■□□□□ 0.2
SEMA3DO95025 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SEMA3DO95025 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.28■□□□□ 0.2
SEMA3DO95025 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.28■□□□□ 0.2
SEMA3DO95025 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
SEMA3DO95025 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SEMA3DO95025 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SEMA3DO95025 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.28■□□□□ 0.2
SEMA3DO95025 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SEMA3DO95025 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
SEMA3DO95025 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SEMA3DO95025 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SEMA3DO95025 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SEMA3DO95025 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.27■□□□□ 0.2
SEMA3DO95025 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SEMA3DO95025 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
SEMA3DO95025 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.27■□□□□ 0.2
SEMA3DO95025 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SEMA3DO95025 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
SEMA3DO95025 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SEMA3DO95025 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
SEMA3DO95025 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SEMA3DO95025 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SEMA3DO95025 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.27■□□□□ 0.2
SEMA3DO95025 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SEMA3DO95025 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.27■□□□□ 0.2
SEMA3DO95025 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.27■□□□□ 0.2
SEMA3DO95025 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SEMA3DO95025 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.27■□□□□ 0.2
SEMA3DO95025 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.27■□□□□ 0.2
SEMA3DO95025 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.27■□□□□ 0.2
SEMA3DO95025 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.27■□□□□ 0.2
SEMA3DO95025 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.27■□□□□ 0.2
SEMA3DO95025 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.27■□□□□ 0.2
SEMA3DO95025 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.27■□□□□ 0.2
SEMA3DO95025 AC006557.2-201ENST00000592985 1240 ntBASIC16.27■□□□□ 0.2
SEMA3DO95025 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SEMA3DO95025 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.27■□□□□ 0.2
SEMA3DO95025 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SEMA3DO95025 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SEMA3DO95025 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.27■□□□□ 0.19
SEMA3DO95025 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
SEMA3DO95025 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SEMA3DO95025 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.27■□□□□ 0.19
SEMA3DO95025 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
SEMA3DO95025 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
SEMA3DO95025 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SEMA3DO95025 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.27■□□□□ 0.19
SEMA3DO95025 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SEMA3DO95025 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
SEMA3DO95025 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SEMA3DO95025 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 AL596257.1-201ENST00000641463 2694 ntBASIC16.26■□□□□ 0.19
SEMA3DO95025 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.26■□□□□ 0.19
SEMA3DO95025 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
SEMA3DO95025 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.26■□□□□ 0.19
SEMA3DO95025 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 PCDH8P1-201ENST00000428983 2773 ntBASIC16.26■□□□□ 0.19
SEMA3DO95025 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.26■□□□□ 0.19
SEMA3DO95025 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.26■□□□□ 0.19
SEMA3DO95025 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.26■□□□□ 0.19
SEMA3DO95025 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.26■□□□□ 0.19
SEMA3DO95025 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.26■□□□□ 0.19
SEMA3DO95025 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.26■□□□□ 0.19
SEMA3DO95025 AL805961.1-202ENST00000641562 540 ntBASIC16.26■□□□□ 0.19
SEMA3DO95025 AC107918.4-202ENST00000641623 219 ntBASIC16.26■□□□□ 0.19
SEMA3DO95025 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.26■□□□□ 0.19
SEMA3DO95025 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.26■□□□□ 0.19
SEMA3DO95025 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
SEMA3DO95025 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
SEMA3DO95025 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SEMA3DO95025 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SEMA3DO95025 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms