Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS4BO75351 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VPS4BO75351 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
VPS4BO75351 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.66■□□□□ 0.26
VPS4BO75351 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS4BO75351 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS4BO75351 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 AL691403.2-201ENST00000618460 490 ntBASIC16.66■□□□□ 0.26
VPS4BO75351 AC018695.7-201ENST00000624587 2492 ntBASIC16.66■□□□□ 0.26
VPS4BO75351 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VPS4BO75351 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS4BO75351 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.66■□□□□ 0.26
VPS4BO75351 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS4BO75351 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.66■□□□□ 0.26
VPS4BO75351 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
VPS4BO75351 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS4BO75351 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS4BO75351 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4BO75351 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
VPS4BO75351 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VPS4BO75351 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4BO75351 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4BO75351 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS4BO75351 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.65■□□□□ 0.26
VPS4BO75351 RN7SL606P-201ENST00000472779 293 ntBASIC16.65■□□□□ 0.26
VPS4BO75351 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS4BO75351 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
VPS4BO75351 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4BO75351 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS4BO75351 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4BO75351 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.65■□□□□ 0.26
VPS4BO75351 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.65■□□□□ 0.26
VPS4BO75351 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4BO75351 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4BO75351 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4BO75351 AL353593.2-201ENST00000602529 1483 ntBASIC16.65■□□□□ 0.26
VPS4BO75351 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
VPS4BO75351 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS4BO75351 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS4BO75351 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VPS4BO75351 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS4BO75351 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
VPS4BO75351 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
VPS4BO75351 AC009336.1-201ENST00000608941 1553 ntBASIC16.64■□□□□ 0.25
VPS4BO75351 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS4BO75351 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VPS4BO75351 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS4BO75351 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS4BO75351 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 RPS2P28-201ENST00000314255 741 ntBASIC16.64■□□□□ 0.25
VPS4BO75351 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS4BO75351 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS4BO75351 AC073648.2-201ENST00000510116 352 ntBASIC16.64■□□□□ 0.25
VPS4BO75351 STK19B-204ENST00000512515 211 ntBASIC16.64■□□□□ 0.25
VPS4BO75351 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS4BO75351 AC139887.3-201ENST00000568585 713 ntBASIC16.64■□□□□ 0.25
VPS4BO75351 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS4BO75351 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.64■□□□□ 0.25
VPS4BO75351 AL135999.2-201ENST00000622438 1686 ntBASIC16.64■□□□□ 0.25
VPS4BO75351 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VPS4BO75351 FRMD8P1-201ENST00000440433 1524 ntBASIC16.64■□□□□ 0.25
VPS4BO75351 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS4BO75351 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS4BO75351 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS4BO75351 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms