Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHOX2O60902 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHOX2O60902 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHOX2O60902 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHOX2O60902 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.98■□□□□ 0.31
SHOX2O60902 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHOX2O60902 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
SHOX2O60902 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHOX2O60902 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.98■□□□□ 0.31
SHOX2O60902 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHOX2O60902 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHOX2O60902 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.98■□□□□ 0.31
SHOX2O60902 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.97■□□□□ 0.31
SHOX2O60902 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SHOX2O60902 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.97■□□□□ 0.31
SHOX2O60902 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
SHOX2O60902 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SHOX2O60902 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.97■□□□□ 0.31
SHOX2O60902 AC007191.1-201ENST00000623179 2995 ntBASIC16.97■□□□□ 0.31
SHOX2O60902 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.97■□□□□ 0.31
SHOX2O60902 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SHOX2O60902 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC16.97■□□□□ 0.31
SHOX2O60902 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
SHOX2O60902 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.97■□□□□ 0.31
SHOX2O60902 AL023803.3-201ENST00000615559 522 ntBASIC16.97■□□□□ 0.31
SHOX2O60902 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.97■□□□□ 0.31
SHOX2O60902 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.97■□□□□ 0.31
SHOX2O60902 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
SHOX2O60902 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SHOX2O60902 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.97■□□□□ 0.31
SHOX2O60902 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 AP002414.2-201ENST00000591780 3365 ntBASIC16.97■□□□□ 0.31
SHOX2O60902 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHOX2O60902 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
SHOX2O60902 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHOX2O60902 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.96■□□□□ 0.31
SHOX2O60902 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SHOX2O60902 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
SHOX2O60902 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHOX2O60902 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC16.96■□□□□ 0.31
SHOX2O60902 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC16.96■□□□□ 0.31
SHOX2O60902 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.96■□□□□ 0.31
SHOX2O60902 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.96■□□□□ 0.31
SHOX2O60902 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
SHOX2O60902 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
SHOX2O60902 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.96■□□□□ 0.31
SHOX2O60902 AC136621.1-201ENST00000624017 2304 ntBASIC16.96■□□□□ 0.31
SHOX2O60902 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHOX2O60902 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHOX2O60902 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHOX2O60902 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHOX2O60902 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHOX2O60902 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.96■□□□□ 0.31
SHOX2O60902 COX5BP2-201ENST00000392354 334 ntBASIC16.96■□□□□ 0.31
SHOX2O60902 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHOX2O60902 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.96■□□□□ 0.31
SHOX2O60902 AC097488.1-201ENST00000507834 756 ntBASIC16.96■□□□□ 0.31
SHOX2O60902 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.96■□□□□ 0.31
SHOX2O60902 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.96■□□□□ 0.31
SHOX2O60902 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.96■□□□□ 0.31
SHOX2O60902 DUX4L17-201ENST00000557360 1267 ntBASIC16.96■□□□□ 0.31
SHOX2O60902 IRX5-204ENST00000560154 879 ntTSL 5 BASIC16.96■□□□□ 0.31
SHOX2O60902 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC16.96■□□□□ 0.31
SHOX2O60902 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.96■□□□□ 0.31
SHOX2O60902 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC16.96■□□□□ 0.31
SHOX2O60902 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.96■□□□□ 0.31
SHOX2O60902 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
SHOX2O60902 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHOX2O60902 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.96■□□□□ 0.31
SHOX2O60902 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.96■□□□□ 0.31
SHOX2O60902 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SHOX2O60902 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SHOX2O60902 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
SHOX2O60902 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SHOX2O60902 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SHOX2O60902 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SHOX2O60902 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
SHOX2O60902 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms