Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 AC091804.1-201ENST00000486888 567 ntBASIC12.94□□□□□ -0.34
COL6A5A8TX70 PRYP6-201ENST00000514804 343 ntBASIC12.94□□□□□ -0.34
COL6A5A8TX70 SCARNA20.5-201ENST00000516991 142 ntBASIC12.94□□□□□ -0.34
COL6A5A8TX70 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 NME4-207ENST00000450036 985 ntTSL 3 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 OARD1-212ENST00000482515 832 ntTSL 2 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 MIR5189-201ENST00000577370 114 ntBASIC12.94□□□□□ -0.34
COL6A5A8TX70 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL6A5A8TX70 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
COL6A5A8TX70 ZBTB12BP-201ENST00000314232 1122 ntBASIC12.93□□□□□ -0.34
COL6A5A8TX70 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 TSACC-208ENST00000481479 741 ntTSL 2 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 AC073439.1-201ENST00000624121 1774 ntBASIC12.93□□□□□ -0.34
COL6A5A8TX70 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 MIR33B-201ENST00000385104 96 ntBASIC12.93□□□□□ -0.34
COL6A5A8TX70 AC104784.1-201ENST00000473096 294 ntBASIC12.93□□□□□ -0.34
COL6A5A8TX70 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 TDH-203ENST00000531764 1110 ntBASIC12.93□□□□□ -0.34
COL6A5A8TX70 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC12.93□□□□□ -0.34
COL6A5A8TX70 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL6A5A8TX70 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 AC007969.1-201ENST00000433675 447 ntBASIC12.92□□□□□ -0.34
COL6A5A8TX70 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 AMT-232ENST00000636199 1546 ntTSL 5 BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms