Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP1AQ9HD42 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CHMP1AQ9HD42 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
CHMP1AQ9HD42 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CHMP1AQ9HD42 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CHMP1AQ9HD42 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP1AQ9HD42 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP1AQ9HD42 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP1AQ9HD42 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP1AQ9HD42 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP1AQ9HD42 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP1AQ9HD42 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP1AQ9HD42 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP1AQ9HD42 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.43■□□□□ 0.86
CHMP1AQ9HD42 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CHMP1AQ9HD42 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP1AQ9HD42 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP1AQ9HD42 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.43■□□□□ 0.86
CHMP1AQ9HD42 MIR219A2-201ENST00000608502 1504 ntBASIC20.43■□□□□ 0.86
CHMP1AQ9HD42 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP1AQ9HD42 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP1AQ9HD42 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP1AQ9HD42 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
CHMP1AQ9HD42 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP1AQ9HD42 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP1AQ9HD42 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP1AQ9HD42 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.41■□□□□ 0.86
CHMP1AQ9HD42 DUX4L11-201ENST00000611504 1267 ntBASIC20.41■□□□□ 0.86
CHMP1AQ9HD42 DUX4L12-201ENST00000614593 1267 ntBASIC20.41■□□□□ 0.86
CHMP1AQ9HD42 DUX4L14-201ENST00000621227 1267 ntBASIC20.41■□□□□ 0.86
CHMP1AQ9HD42 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP1AQ9HD42 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP1AQ9HD42 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP1AQ9HD42 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP1AQ9HD42 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP1AQ9HD42 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP1AQ9HD42 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP1AQ9HD42 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.4■□□□□ 0.86
CHMP1AQ9HD42 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.4■□□□□ 0.86
CHMP1AQ9HD42 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP1AQ9HD42 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CHMP1AQ9HD42 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP1AQ9HD42 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP1AQ9HD42 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP1AQ9HD42 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP1AQ9HD42 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP1AQ9HD42 AC148477.6-201ENST00000623746 465 ntBASIC20.38■□□□□ 0.85
CHMP1AQ9HD42 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CHMP1AQ9HD42 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHMP1AQ9HD42 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP1AQ9HD42 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP1AQ9HD42 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP1AQ9HD42 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP1AQ9HD42 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
CHMP1AQ9HD42 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP1AQ9HD42 AL359258.2-201ENST00000564063 1566 ntBASIC20.37■□□□□ 0.85
CHMP1AQ9HD42 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP1AQ9HD42 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.37■□□□□ 0.85
CHMP1AQ9HD42 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
CHMP1AQ9HD42 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.36■□□□□ 0.85
CHMP1AQ9HD42 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.36■□□□□ 0.85
CHMP1AQ9HD42 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP1AQ9HD42 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP1AQ9HD42 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CHMP1AQ9HD42 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP1AQ9HD42 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.36■□□□□ 0.85
CHMP1AQ9HD42 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP1AQ9HD42 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP1AQ9HD42 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP1AQ9HD42 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP1AQ9HD42 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.35■□□□□ 0.85
CHMP1AQ9HD42 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.35■□□□□ 0.85
CHMP1AQ9HD42 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP1AQ9HD42 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP1AQ9HD42 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP1AQ9HD42 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP1AQ9HD42 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP1AQ9HD42 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP1AQ9HD42 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP1AQ9HD42 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CHMP1AQ9HD42 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP1AQ9HD42 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP1AQ9HD42 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CHMP1AQ9HD42 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP1AQ9HD42 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP1AQ9HD42 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP1AQ9HD42 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP1AQ9HD42 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP1AQ9HD42 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP1AQ9HD42 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP1AQ9HD42 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP1AQ9HD42 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP1AQ9HD42 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP1AQ9HD42 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP1AQ9HD42 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP1AQ9HD42 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP1AQ9HD42 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CHMP1AQ9HD42 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP1AQ9HD42 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CHMP1AQ9HD42 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms