Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PTCHD3Q3KNS1 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PTCHD3Q3KNS1 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PTCHD3Q3KNS1 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
PTCHD3Q3KNS1 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
PTCHD3Q3KNS1 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
PTCHD3Q3KNS1 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
PTCHD3Q3KNS1 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
PTCHD3Q3KNS1 AC135731.1-201ENST00000569415 2548 ntBASIC23.47■■□□□ 1.35
PTCHD3Q3KNS1 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
PTCHD3Q3KNS1 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
PTCHD3Q3KNS1 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
PTCHD3Q3KNS1 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
PTCHD3Q3KNS1 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PTCHD3Q3KNS1 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
PTCHD3Q3KNS1 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.45■■□□□ 1.34
PTCHD3Q3KNS1 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
PTCHD3Q3KNS1 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
PTCHD3Q3KNS1 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
PTCHD3Q3KNS1 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
PTCHD3Q3KNS1 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
PTCHD3Q3KNS1 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
PTCHD3Q3KNS1 AC009831.1-201ENST00000580420 1582 ntBASIC23.44■■□□□ 1.34
PTCHD3Q3KNS1 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.44■■□□□ 1.34
PTCHD3Q3KNS1 AC096887.2-201ENST00000623443 1957 ntBASIC23.44■■□□□ 1.34
PTCHD3Q3KNS1 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC23.44■■□□□ 1.34
PTCHD3Q3KNS1 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
PTCHD3Q3KNS1 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
PTCHD3Q3KNS1 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC23.44■■□□□ 1.34
PTCHD3Q3KNS1 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
PTCHD3Q3KNS1 AC133552.2-201ENST00000619106 1032 ntBASIC23.44■■□□□ 1.34
PTCHD3Q3KNS1 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.44■■□□□ 1.34
PTCHD3Q3KNS1 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.43■■□□□ 1.34
PTCHD3Q3KNS1 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.43■■□□□ 1.34
PTCHD3Q3KNS1 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
PTCHD3Q3KNS1 AC004987.1-201ENST00000428627 508 ntBASIC23.43■■□□□ 1.34
PTCHD3Q3KNS1 RP9P-202ENST00000450133 1212 ntBASIC23.43■■□□□ 1.34
PTCHD3Q3KNS1 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC23.43■■□□□ 1.34
PTCHD3Q3KNS1 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
PTCHD3Q3KNS1 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.43■■□□□ 1.34
PTCHD3Q3KNS1 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PTCHD3Q3KNS1 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PTCHD3Q3KNS1 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PTCHD3Q3KNS1 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PTCHD3Q3KNS1 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
PTCHD3Q3KNS1 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC23.42■■□□□ 1.34
PTCHD3Q3KNS1 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PTCHD3Q3KNS1 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PTCHD3Q3KNS1 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
PTCHD3Q3KNS1 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.41■■□□□ 1.34
PTCHD3Q3KNS1 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
PTCHD3Q3KNS1 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
PTCHD3Q3KNS1 ATP5G2P3-201ENST00000429083 425 ntBASIC23.41■■□□□ 1.34
PTCHD3Q3KNS1 AL592293.1-201ENST00000502889 1188 ntBASIC23.41■■□□□ 1.34
PTCHD3Q3KNS1 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
PTCHD3Q3KNS1 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.41■■□□□ 1.34
PTCHD3Q3KNS1 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
PTCHD3Q3KNS1 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
PTCHD3Q3KNS1 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.4■■□□□ 1.34
PTCHD3Q3KNS1 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
PTCHD3Q3KNS1 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PTCHD3Q3KNS1 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.4■■□□□ 1.34
PTCHD3Q3KNS1 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.4■■□□□ 1.34
PTCHD3Q3KNS1 TSPY13P-201ENST00000338964 914 ntBASIC23.4■■□□□ 1.34
PTCHD3Q3KNS1 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PTCHD3Q3KNS1 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
PTCHD3Q3KNS1 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
PTCHD3Q3KNS1 AC020928.2-201ENST00000588717 2197 ntBASIC23.4■■□□□ 1.34
PTCHD3Q3KNS1 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PTCHD3Q3KNS1 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
PTCHD3Q3KNS1 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
PTCHD3Q3KNS1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
PTCHD3Q3KNS1 AC093536.1-201ENST00000569153 554 ntBASIC23.39■■□□□ 1.33
PTCHD3Q3KNS1 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.39■■□□□ 1.33
PTCHD3Q3KNS1 AC026202.3-201ENST00000600805 1127 ntBASIC23.39■■□□□ 1.33
PTCHD3Q3KNS1 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
PTCHD3Q3KNS1 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.39■■□□□ 1.33
PTCHD3Q3KNS1 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
PTCHD3Q3KNS1 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PTCHD3Q3KNS1 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
PTCHD3Q3KNS1 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
PTCHD3Q3KNS1 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
PTCHD3Q3KNS1 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC23.37■■□□□ 1.33
PTCHD3Q3KNS1 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
PTCHD3Q3KNS1 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
PTCHD3Q3KNS1 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.37■■□□□ 1.33
PTCHD3Q3KNS1 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
PTCHD3Q3KNS1 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
PTCHD3Q3KNS1 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
PTCHD3Q3KNS1 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
PTCHD3Q3KNS1 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
PTCHD3Q3KNS1 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
PTCHD3Q3KNS1 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC23.36■■□□□ 1.33
PTCHD3Q3KNS1 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC23.36■■□□□ 1.33
PTCHD3Q3KNS1 AC129492.7-201ENST00000622992 756 ntBASIC23.36■■□□□ 1.33
PTCHD3Q3KNS1 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
PTCHD3Q3KNS1 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
PTCHD3Q3KNS1 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PTCHD3Q3KNS1 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
PTCHD3Q3KNS1 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms