Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TRIM13O60858 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TRIM13O60858 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.59■■□□□ 1.37
TRIM13O60858 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
TRIM13O60858 RPS2P35-201ENST00000443417 897 ntBASIC23.58■■□□□ 1.37
TRIM13O60858 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.58■■□□□ 1.37
TRIM13O60858 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.58■■□□□ 1.37
TRIM13O60858 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC23.58■■□□□ 1.37
TRIM13O60858 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
TRIM13O60858 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC23.57■■□□□ 1.36
TRIM13O60858 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.57■■□□□ 1.36
TRIM13O60858 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TRIM13O60858 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.57■■□□□ 1.36
TRIM13O60858 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TRIM13O60858 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.57■■□□□ 1.36
TRIM13O60858 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TRIM13O60858 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TRIM13O60858 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
TRIM13O60858 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
TRIM13O60858 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
TRIM13O60858 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.56■■□□□ 1.36
TRIM13O60858 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
TRIM13O60858 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
TRIM13O60858 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
TRIM13O60858 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
TRIM13O60858 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
TRIM13O60858 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
TRIM13O60858 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
TRIM13O60858 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
TRIM13O60858 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
TRIM13O60858 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.55■■□□□ 1.36
TRIM13O60858 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
TRIM13O60858 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.55■■□□□ 1.36
TRIM13O60858 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC23.55■■□□□ 1.36
TRIM13O60858 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
TRIM13O60858 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
TRIM13O60858 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
TRIM13O60858 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
TRIM13O60858 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
TRIM13O60858 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
TRIM13O60858 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
TRIM13O60858 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
TRIM13O60858 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
TRIM13O60858 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
TRIM13O60858 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
TRIM13O60858 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
TRIM13O60858 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
TRIM13O60858 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
TRIM13O60858 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
TRIM13O60858 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.53■■□□□ 1.36
TRIM13O60858 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
TRIM13O60858 AC097639.1-201ENST00000565519 1891 ntBASIC23.52■■□□□ 1.36
TRIM13O60858 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
TRIM13O60858 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.52■■□□□ 1.36
TRIM13O60858 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
TRIM13O60858 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.51■■□□□ 1.35
TRIM13O60858 AP003733.4-201ENST00000623785 1697 ntBASIC23.51■■□□□ 1.35
TRIM13O60858 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.51■■□□□ 1.35
TRIM13O60858 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
TRIM13O60858 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
TRIM13O60858 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
TRIM13O60858 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
TRIM13O60858 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
TRIM13O60858 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
TRIM13O60858 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
TRIM13O60858 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
TRIM13O60858 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.5■■□□□ 1.35
TRIM13O60858 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
TRIM13O60858 EED-207ENST00000528180 1745 ntTSL 5 BASIC23.5■■□□□ 1.35
TRIM13O60858 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
TRIM13O60858 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
TRIM13O60858 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
TRIM13O60858 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
TRIM13O60858 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
TRIM13O60858 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
TRIM13O60858 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.49■■□□□ 1.35
TRIM13O60858 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
TRIM13O60858 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.49■■□□□ 1.35
TRIM13O60858 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
TRIM13O60858 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
TRIM13O60858 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
TRIM13O60858 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
TRIM13O60858 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
TRIM13O60858 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
TRIM13O60858 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
TRIM13O60858 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.48■■□□□ 1.35
TRIM13O60858 AC126177.7-201ENST00000547904 679 ntBASIC23.48■■□□□ 1.35
TRIM13O60858 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.48■■□□□ 1.35
TRIM13O60858 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
TRIM13O60858 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
TRIM13O60858 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.47■■□□□ 1.35
TRIM13O60858 SLC6A10P-202ENST00000431994 2058 ntBASIC23.47■■□□□ 1.35
TRIM13O60858 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
TRIM13O60858 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
TRIM13O60858 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.47■■□□□ 1.35
TRIM13O60858 ZNRF2P2-203ENST00000454624 420 ntBASIC23.47■■□□□ 1.35
TRIM13O60858 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.47■■□□□ 1.35
TRIM13O60858 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
TRIM13O60858 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
TRIM13O60858 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms