Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.29■□□□□ 0.84
SDCBPO00560 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.29■□□□□ 0.84
SDCBPO00560 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SDCBPO00560 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SDCBPO00560 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SDCBPO00560 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SDCBPO00560 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
SDCBPO00560 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.28■□□□□ 0.84
SDCBPO00560 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.28■□□□□ 0.84
SDCBPO00560 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SDCBPO00560 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.28■□□□□ 0.84
SDCBPO00560 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SDCBPO00560 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SDCBPO00560 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SDCBPO00560 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SDCBPO00560 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SDCBPO00560 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SDCBPO00560 AL139125.2-201ENST00000623134 1869 ntBASIC20.28■□□□□ 0.84
SDCBPO00560 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SDCBPO00560 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SDCBPO00560 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SDCBPO00560 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SDCBPO00560 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SDCBPO00560 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.27■□□□□ 0.84
SDCBPO00560 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.27■□□□□ 0.84
SDCBPO00560 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
SDCBPO00560 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SDCBPO00560 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SDCBPO00560 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SDCBPO00560 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.27■□□□□ 0.83
SDCBPO00560 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SDCBPO00560 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.26■□□□□ 0.83
SDCBPO00560 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
SDCBPO00560 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.26■□□□□ 0.83
SDCBPO00560 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.26■□□□□ 0.83
SDCBPO00560 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SDCBPO00560 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.26■□□□□ 0.83
SDCBPO00560 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDCBPO00560 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDCBPO00560 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDCBPO00560 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDCBPO00560 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDCBPO00560 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDCBPO00560 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SDCBPO00560 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SDCBPO00560 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SDCBPO00560 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SDCBPO00560 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SDCBPO00560 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.25■□□□□ 0.83
SDCBPO00560 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SDCBPO00560 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SDCBPO00560 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SDCBPO00560 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SDCBPO00560 AL359258.2-201ENST00000564063 1566 ntBASIC20.25■□□□□ 0.83
SDCBPO00560 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SDCBPO00560 AC096887.2-201ENST00000623443 1957 ntBASIC20.25■□□□□ 0.83
SDCBPO00560 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.24■□□□□ 0.83
SDCBPO00560 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SDCBPO00560 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.24■□□□□ 0.83
SDCBPO00560 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SDCBPO00560 PVT1-219ENST00000523427 938 ntTSL 3 BASIC20.24■□□□□ 0.83
SDCBPO00560 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SDCBPO00560 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SDCBPO00560 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SDCBPO00560 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SDCBPO00560 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
SDCBPO00560 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.23■□□□□ 0.83
SDCBPO00560 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDCBPO00560 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDCBPO00560 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDCBPO00560 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDCBPO00560 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.23■□□□□ 0.83
SDCBPO00560 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SDCBPO00560 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SDCBPO00560 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SDCBPO00560 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SDCBPO00560 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
SDCBPO00560 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.22■□□□□ 0.83
SDCBPO00560 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SDCBPO00560 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.21■□□□□ 0.83
SDCBPO00560 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.21■□□□□ 0.83
SDCBPO00560 AC126177.7-201ENST00000547904 679 ntBASIC20.21■□□□□ 0.83
SDCBPO00560 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SDCBPO00560 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.2■□□□□ 0.82
SDCBPO00560 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SDCBPO00560 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SDCBPO00560 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
SDCBPO00560 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.2■□□□□ 0.82
SDCBPO00560 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SDCBPO00560 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SDCBPO00560 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SDCBPO00560 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SDCBPO00560 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.19■□□□□ 0.82
SDCBPO00560 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.19■□□□□ 0.82
SDCBPO00560 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SDCBPO00560 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SDCBPO00560 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SDCBPO00560 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
SDCBPO00560 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SDCBPO00560 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms