Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 UNC93B2-201ENST00000285383 730 ntBASIC16.09■□□□□ 0.17
AP4S1Q9Y587 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 AC109462.3-201ENST00000573934 613 ntBASIC16.09■□□□□ 0.17
AP4S1Q9Y587 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 AC019129.2-201ENST00000609837 1235 ntBASIC16.09■□□□□ 0.17
AP4S1Q9Y587 AC026471.5-201ENST00000615068 467 ntBASIC16.09■□□□□ 0.17
AP4S1Q9Y587 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 TUBB8P12-201ENST00000308911 1335 ntBASIC16.09■□□□□ 0.17
AP4S1Q9Y587 TUBB7P-202ENST00000428444 1305 ntBASIC16.09■□□□□ 0.17
AP4S1Q9Y587 TUBB8P7-204ENST00000567960 1332 ntBASIC16.09■□□□□ 0.17
AP4S1Q9Y587 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 GPR89P-201ENST00000407924 1495 ntBASIC16.09■□□□□ 0.17
AP4S1Q9Y587 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 AC010460.3-201ENST00000511359 1579 ntBASIC16.09■□□□□ 0.17
AP4S1Q9Y587 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
AP4S1Q9Y587 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
AP4S1Q9Y587 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
AP4S1Q9Y587 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 AC107956.1-201ENST00000494359 873 ntBASIC16.08■□□□□ 0.16
AP4S1Q9Y587 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
AP4S1Q9Y587 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.07■□□□□ 0.16
AP4S1Q9Y587 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 HLA-L-209ENST00000420110 1011 ntBASIC16.07■□□□□ 0.16
AP4S1Q9Y587 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.07■□□□□ 0.16
AP4S1Q9Y587 C2orf69P3-201ENST00000565542 1120 ntBASIC16.07■□□□□ 0.16
AP4S1Q9Y587 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms