Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 MIR1224-201ENST00000408193 85 ntBASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 FOSL1P1-201ENST00000511041 816 ntBASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HIF3AQ9Y2N7 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
HIF3AQ9Y2N7 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.33■□□□□ 0.05
HIF3AQ9Y2N7 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HIF3AQ9Y2N7 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HIF3AQ9Y2N7 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
HIF3AQ9Y2N7 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
HIF3AQ9Y2N7 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 UPK3BP1-201ENST00000428678 509 ntBASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 BX005266.1-201ENST00000473402 457 ntBASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 PCDHB19P-201ENST00000570871 2371 ntBASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HIF3AQ9Y2N7 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 NKAPP1-205ENST00000585790 367 ntBASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 AC092171.3-201ENST00000610122 2651 ntBASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 AC243591.1-201ENST00000452967 1364 ntBASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.32■□□□□ 0.04
HIF3AQ9Y2N7 LINC00895-201ENST00000629028 1637 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms