Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC31.95■■■□□ 2.71
SHROOM4Q9ULL8 AC068880.1-201ENST00000507289 2297 ntBASIC31.95■■■□□ 2.71
SHROOM4Q9ULL8 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
SHROOM4Q9ULL8 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC31.95■■■□□ 2.7
SHROOM4Q9ULL8 GIMAP3P-201ENST00000495150 836 ntBASIC31.95■■■□□ 2.7
SHROOM4Q9ULL8 AC106886.1-201ENST00000568660 600 ntBASIC31.95■■■□□ 2.7
SHROOM4Q9ULL8 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC31.95■■■□□ 2.7
SHROOM4Q9ULL8 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC31.95■■■□□ 2.7
SHROOM4Q9ULL8 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
SHROOM4Q9ULL8 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
SHROOM4Q9ULL8 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
SHROOM4Q9ULL8 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC31.95■■■□□ 2.7
SHROOM4Q9ULL8 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 GATB-213ENST00000515812 1893 ntTSL 5 BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 AC245100.3-201ENST00000441281 285 ntBASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 MIR6799-201ENST00000620297 69 ntBASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 AL590560.3-201ENST00000623350 461 ntBASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC31.94■■■□□ 2.7
SHROOM4Q9ULL8 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 AC004233.3-201ENST00000607794 1269 ntBASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 AC008267.7-201ENST00000624570 1194 ntBASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 HARS-204ENST00000438307 1789 ntTSL 2 BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 AC093525.9-201ENST00000624961 1746 ntBASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
SHROOM4Q9ULL8 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 AC017083.2-201ENST00000608069 979 ntBASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 UXT-AS1-201ENST00000590504 1525 ntBASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SHROOM4Q9ULL8 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 RPS2P32-201ENST00000439199 892 ntBASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 ACA64.2-201ENST00000459014 129 ntBASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 WASH6P-202ENST00000359512 1437 ntBASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
SHROOM4Q9ULL8 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 MIR346-201ENST00000362234 95 ntBASIC31.9■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms