Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.98■□□□□ 0.31
CPNE1Q99829 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.98■□□□□ 0.31
CPNE1Q99829 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
CPNE1Q99829 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.98■□□□□ 0.31
CPNE1Q99829 NPAP1P7-201ENST00000613027 823 ntBASIC16.98■□□□□ 0.31
CPNE1Q99829 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.98■□□□□ 0.31
CPNE1Q99829 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.98■□□□□ 0.31
CPNE1Q99829 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 AL662844.4-201ENST00000606367 2838 ntBASIC16.98■□□□□ 0.31
CPNE1Q99829 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
CPNE1Q99829 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CPNE1Q99829 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
CPNE1Q99829 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.98■□□□□ 0.31
CPNE1Q99829 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CPNE1Q99829 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.98■□□□□ 0.31
CPNE1Q99829 AC006538.1-201ENST00000567905 1585 ntBASIC16.98■□□□□ 0.31
CPNE1Q99829 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
CPNE1Q99829 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.97■□□□□ 0.31
CPNE1Q99829 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.97■□□□□ 0.31
CPNE1Q99829 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.97■□□□□ 0.31
CPNE1Q99829 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
CPNE1Q99829 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
CPNE1Q99829 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.97■□□□□ 0.31
CPNE1Q99829 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.97■□□□□ 0.31
CPNE1Q99829 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CPNE1Q99829 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
CPNE1Q99829 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
CPNE1Q99829 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.97■□□□□ 0.31
CPNE1Q99829 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 AC069148.1-201ENST00000608741 768 ntBASIC16.97■□□□□ 0.31
CPNE1Q99829 AC079328.2-201ENST00000561241 3354 ntBASIC16.97■□□□□ 0.31
CPNE1Q99829 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.97■□□□□ 0.31
CPNE1Q99829 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.97■□□□□ 0.31
CPNE1Q99829 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CPNE1Q99829 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CPNE1Q99829 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CPNE1Q99829 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CPNE1Q99829 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CPNE1Q99829 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CPNE1Q99829 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.96■□□□□ 0.31
CPNE1Q99829 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.96■□□□□ 0.31
CPNE1Q99829 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.96■□□□□ 0.31
CPNE1Q99829 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.96■□□□□ 0.31
CPNE1Q99829 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 AL513523.2-202ENST00000427283 2040 ntBASIC16.96■□□□□ 0.31
CPNE1Q99829 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
CPNE1Q99829 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 NUS1P2-201ENST00000417358 873 ntBASIC16.96■□□□□ 0.31
CPNE1Q99829 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.96■□□□□ 0.31
CPNE1Q99829 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.96■□□□□ 0.31
CPNE1Q99829 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.96■□□□□ 0.31
CPNE1Q99829 TERC-201ENST00000602385 541 ntBASIC16.96■□□□□ 0.31
CPNE1Q99829 AL353135.1-201ENST00000606729 504 ntBASIC16.96■□□□□ 0.31
CPNE1Q99829 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 AC243591.1-201ENST00000452967 1364 ntBASIC16.96■□□□□ 0.31
CPNE1Q99829 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CPNE1Q99829 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
CPNE1Q99829 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.96■□□□□ 0.31
CPNE1Q99829 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CPNE1Q99829 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms