Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 KRT18P1-202ENST00000452408 1331 ntBASIC19.29■□□□□ 0.68
ERCC4Q92889 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.29■□□□□ 0.68
ERCC4Q92889 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.29■□□□□ 0.68
ERCC4Q92889 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
ERCC4Q92889 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.29■□□□□ 0.68
ERCC4Q92889 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
ERCC4Q92889 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
ERCC4Q92889 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 AL049597.2-201ENST00000565575 961 ntBASIC19.29■□□□□ 0.68
ERCC4Q92889 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.29■□□□□ 0.68
ERCC4Q92889 BNIP3P18-201ENST00000593976 575 ntBASIC19.29■□□□□ 0.68
ERCC4Q92889 AL121672.3-201ENST00000608644 468 ntBASIC19.29■□□□□ 0.68
ERCC4Q92889 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
ERCC4Q92889 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
ERCC4Q92889 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.29■□□□□ 0.68
ERCC4Q92889 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.29■□□□□ 0.68
ERCC4Q92889 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
ERCC4Q92889 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.28■□□□□ 0.68
ERCC4Q92889 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
ERCC4Q92889 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
ERCC4Q92889 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.28■□□□□ 0.68
ERCC4Q92889 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
ERCC4Q92889 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 RCN1P2-201ENST00000398357 915 ntBASIC19.28■□□□□ 0.68
ERCC4Q92889 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.28■□□□□ 0.68
ERCC4Q92889 TPSP2-201ENST00000561760 610 ntBASIC19.28■□□□□ 0.68
ERCC4Q92889 AL121956.5-201ENST00000625261 221 ntBASIC19.28■□□□□ 0.68
ERCC4Q92889 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.28■□□□□ 0.68
ERCC4Q92889 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 AC005052.1-201ENST00000625181 2492 ntBASIC19.28■□□□□ 0.68
ERCC4Q92889 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC4Q92889 GPR89P-201ENST00000407924 1495 ntBASIC19.28■□□□□ 0.68
ERCC4Q92889 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.27■□□□□ 0.68
ERCC4Q92889 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.27■□□□□ 0.68
ERCC4Q92889 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
ERCC4Q92889 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.27■□□□□ 0.68
ERCC4Q92889 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 HLA-A-202ENST00000376806 1854 ntBASIC19.27■□□□□ 0.68
ERCC4Q92889 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.27■□□□□ 0.68
ERCC4Q92889 TOB2P1-201ENST00000469761 992 ntBASIC19.27■□□□□ 0.68
ERCC4Q92889 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.27■□□□□ 0.68
ERCC4Q92889 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.27■□□□□ 0.68
ERCC4Q92889 AL590326.2-201ENST00000625139 305 ntBASIC19.27■□□□□ 0.68
ERCC4Q92889 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.27■□□□□ 0.68
ERCC4Q92889 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.27■□□□□ 0.68
ERCC4Q92889 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC4Q92889 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
ERCC4Q92889 INTS4P1-201ENST00000438455 1935 ntBASIC19.27■□□□□ 0.67
ERCC4Q92889 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
ERCC4Q92889 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
ERCC4Q92889 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
ERCC4Q92889 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.27■□□□□ 0.67
ERCC4Q92889 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
ERCC4Q92889 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
ERCC4Q92889 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.26■□□□□ 0.67
ERCC4Q92889 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC4Q92889 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms