Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 PP12613-201ENST00000424958 2230 ntBASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 FAM8A3P-201ENST00000427218 844 ntBASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 DUX4L27-201ENST00000554796 1261 ntBASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 AC087641.1-201ENST00000557561 1021 ntBASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 SPCS2P1-201ENST00000561636 679 ntBASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 MIR3197-201ENST00000582241 73 ntBASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
RNFT1Q5M7Z0 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
RNFT1Q5M7Z0 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
RNFT1Q5M7Z0 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RNFT1Q5M7Z0 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
RNFT1Q5M7Z0 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.21■□□□□ 0.02
RNFT1Q5M7Z0 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RNFT1Q5M7Z0 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 LINC00896-202ENST00000609602 2128 ntBASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 WASH6P-202ENST00000359512 1437 ntBASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 KRT8P49-201ENST00000604166 1432 ntBASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 FAM86GP-201ENST00000448322 971 ntBASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 AL390955.2-201ENST00000603032 514 ntBASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNFT1Q5M7Z0 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 UXT-AS1-201ENST00000590504 1525 ntBASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNFT1Q5M7Z0 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms