Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 KRT17P8-201ENST00000540749 863 ntBASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 BCYRN1-201ENST00000418539 200 ntBASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 RARRES2P9-201ENST00000565168 469 ntBASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 AC093525.9-201ENST00000624961 1746 ntBASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 AC092658.1-201ENST00000505836 891 ntBASIC20.5■□□□□ 0.87
CCDC88AQ3V6T2 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 AL353779.1-201ENST00000434793 351 ntBASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 RAB43P1-201ENST00000561790 589 ntBASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC88AQ3V6T2 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 TTTY23B-201ENST00000442790 549 ntBASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 AC008494.3-201ENST00000606615 944 ntBASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 RAB34-223ENST00000636154 730 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC88AQ3V6T2 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 AC106886.1-201ENST00000568660 600 ntBASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 AC009407.1-201ENST00000568958 598 ntBASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 CETN4P-206ENST00000642099 2168 ntBASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 KRT223P-202ENST00000449164 1292 ntBASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC88AQ3V6T2 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms