Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC12.04□□□□□ -0.48
PRKDCP78527 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC12.04□□□□□ -0.48
PRKDCP78527 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC12.04□□□□□ -0.48
PRKDCP78527 AL033527.5-202ENST00000641632 1098 ntBASIC12.04□□□□□ -0.48
PRKDCP78527 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.04□□□□□ -0.48
PRKDCP78527 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC12.04□□□□□ -0.48
PRKDCP78527 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
PRKDCP78527 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC12.04□□□□□ -0.48
PRKDCP78527 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC12.04□□□□□ -0.48
PRKDCP78527 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
PRKDCP78527 MEP1AP4-201ENST00000423244 1087 ntBASIC12.04□□□□□ -0.48
PRKDCP78527 WDR53-204ENST00000433160 887 ntTSL 5 BASIC12.04□□□□□ -0.48
PRKDCP78527 BX284668.4-201ENST00000453917 508 ntBASIC12.04□□□□□ -0.48
PRKDCP78527 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC12.04□□□□□ -0.48
PRKDCP78527 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC12.04□□□□□ -0.48
PRKDCP78527 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC12.04□□□□□ -0.48
PRKDCP78527 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC12.04□□□□□ -0.48
PRKDCP78527 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC12.04□□□□□ -0.48
PRKDCP78527 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
PRKDCP78527 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
PRKDCP78527 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
PRKDCP78527 AC104306.2-201ENST00000451877 341 ntBASIC12.04□□□□□ -0.48
PRKDCP78527 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC12.04□□□□□ -0.48
PRKDCP78527 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC12.04□□□□□ -0.48
PRKDCP78527 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC12.04□□□□□ -0.48
PRKDCP78527 WT1-AS_2.1-201ENST00000613208 137 ntBASIC12.04□□□□□ -0.48
PRKDCP78527 ABBA01031663.1-201ENST00000635630 790 ntBASIC12.04□□□□□ -0.48
PRKDCP78527 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
PRKDCP78527 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
PRKDCP78527 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 AC138028.6-201ENST00000616106 1482 ntBASIC12.03□□□□□ -0.48
PRKDCP78527 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
PRKDCP78527 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 RPL35-206ENST00000629845 340 ntTSL 5 BASIC12.03□□□□□ -0.48
PRKDCP78527 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC12.03□□□□□ -0.48
PRKDCP78527 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
PRKDCP78527 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC12.03□□□□□ -0.48
PRKDCP78527 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC12.03□□□□□ -0.48
PRKDCP78527 FTH1P14-201ENST00000482930 551 ntBASIC12.03□□□□□ -0.48
PRKDCP78527 RRP7BP-205ENST00000566851 833 ntBASIC12.03□□□□□ -0.48
PRKDCP78527 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC12.03□□□□□ -0.48
PRKDCP78527 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC12.03□□□□□ -0.48
PRKDCP78527 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 AL162726.2-201ENST00000438986 1017 ntBASIC12.03□□□□□ -0.48
PRKDCP78527 KRT90P-201ENST00000549264 1064 ntBASIC12.03□□□□□ -0.48
PRKDCP78527 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC12.03□□□□□ -0.48
PRKDCP78527 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC12.03□□□□□ -0.48
PRKDCP78527 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC12.03□□□□□ -0.48
PRKDCP78527 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC12.03□□□□□ -0.48
PRKDCP78527 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC12.03□□□□□ -0.48
PRKDCP78527 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PRKDCP78527 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC12.02□□□□□ -0.48
PRKDCP78527 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
PRKDCP78527 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
PRKDCP78527 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC12.02□□□□□ -0.48
PRKDCP78527 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
PRKDCP78527 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC12.02□□□□□ -0.48
PRKDCP78527 OARD1-212ENST00000482515 832 ntTSL 2 BASIC12.02□□□□□ -0.48
PRKDCP78527 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
PRKDCP78527 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
PRKDCP78527 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
PRKDCP78527 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC12.02□□□□□ -0.48
PRKDCP78527 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.48
PRKDCP78527 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC12.02□□□□□ -0.48
PRKDCP78527 AL031598.1-201ENST00000561511 1773 ntBASIC12.02□□□□□ -0.48
PRKDCP78527 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
PRKDCP78527 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.48
PRKDCP78527 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
PRKDCP78527 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
PRKDCP78527 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
PRKDCP78527 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PRKDCP78527 AC135776.1-201ENST00000319817 2481 ntBASIC12.02□□□□□ -0.49
PRKDCP78527 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PRKDCP78527 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PRKDCP78527 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PRKDCP78527 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms