Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.17■□□□□ 0.66
CCNA1P78396 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.17■□□□□ 0.66
CCNA1P78396 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC19.17■□□□□ 0.66
CCNA1P78396 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 SERBP1P5-201ENST00000510079 1181 ntBASIC19.17■□□□□ 0.66
CCNA1P78396 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC19.17■□□□□ 0.66
CCNA1P78396 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC19.17■□□□□ 0.66
CCNA1P78396 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
CCNA1P78396 AC073389.1-201ENST00000595595 795 ntBASIC19.17■□□□□ 0.66
CCNA1P78396 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
CCNA1P78396 AC007967.4-201ENST00000614700 386 ntBASIC19.17■□□□□ 0.66
CCNA1P78396 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CCNA1P78396 AL354751.1-201ENST00000412768 1863 ntBASIC19.17■□□□□ 0.66
CCNA1P78396 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.17■□□□□ 0.66
CCNA1P78396 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.17■□□□□ 0.66
CCNA1P78396 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CCNA1P78396 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
CCNA1P78396 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.16■□□□□ 0.66
CCNA1P78396 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.16■□□□□ 0.66
CCNA1P78396 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 AP3S2-216ENST00000617003 1561 ntBASIC19.16■□□□□ 0.66
CCNA1P78396 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CCNA1P78396 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CCNA1P78396 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCNA1P78396 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC19.16■□□□□ 0.66
CCNA1P78396 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 LY6E-204ENST00000519546 971 ntTSL 2 BASIC19.16■□□□□ 0.66
CCNA1P78396 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.16■□□□□ 0.66
CCNA1P78396 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC19.16■□□□□ 0.66
CCNA1P78396 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC19.16■□□□□ 0.66
CCNA1P78396 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.16■□□□□ 0.66
CCNA1P78396 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
CCNA1P78396 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
CCNA1P78396 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.16■□□□□ 0.66
CCNA1P78396 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.16■□□□□ 0.66
CCNA1P78396 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCNA1P78396 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.15■□□□□ 0.66
CCNA1P78396 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CCNA1P78396 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.15■□□□□ 0.66
CCNA1P78396 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.15■□□□□ 0.66
CCNA1P78396 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 GRAP-202ENST00000395635 834 ntTSL 2 BASIC19.15■□□□□ 0.66
CCNA1P78396 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC19.15■□□□□ 0.66
CCNA1P78396 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC19.15■□□□□ 0.66
CCNA1P78396 CCDC74BP1-201ENST00000508880 1123 ntBASIC19.15■□□□□ 0.66
CCNA1P78396 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.15■□□□□ 0.66
CCNA1P78396 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC19.15■□□□□ 0.66
CCNA1P78396 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC19.15■□□□□ 0.66
CCNA1P78396 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.15■□□□□ 0.66
CCNA1P78396 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.15■□□□□ 0.66
CCNA1P78396 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CCNA1P78396 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNA1P78396 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
CCNA1P78396 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.15■□□□□ 0.66
CCNA1P78396 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.15■□□□□ 0.66
CCNA1P78396 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CCNA1P78396 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.14■□□□□ 0.66
CCNA1P78396 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCNA1P78396 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.14■□□□□ 0.66
CCNA1P78396 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.14■□□□□ 0.65
CCNA1P78396 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCNA1P78396 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC19.14■□□□□ 0.65
CCNA1P78396 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCNA1P78396 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CCNA1P78396 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms