Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 BCAR1-209ENST00000546196 1340 ntBASIC15.7■□□□□ 0.1
RNF4P78317 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
RNF4P78317 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
RNF4P78317 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
RNF4P78317 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.7■□□□□ 0.1
RNF4P78317 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.7■□□□□ 0.1
RNF4P78317 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.7■□□□□ 0.1
RNF4P78317 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.7■□□□□ 0.1
RNF4P78317 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
RNF4P78317 AC002347.1-201ENST00000569543 541 ntBASIC15.7■□□□□ 0.1
RNF4P78317 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.7■□□□□ 0.1
RNF4P78317 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.7■□□□□ 0.1
RNF4P78317 AC092865.6-201ENST00000642101 219 ntBASIC15.7■□□□□ 0.1
RNF4P78317 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.7■□□□□ 0.1
RNF4P78317 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC15.7■□□□□ 0.1
RNF4P78317 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.7■□□□□ 0.1
RNF4P78317 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
RNF4P78317 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
RNF4P78317 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
RNF4P78317 AC092068.3-201ENST00000587894 2016 ntBASIC15.7■□□□□ 0.1
RNF4P78317 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.7■□□□□ 0.1
RNF4P78317 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.7■□□□□ 0.1
RNF4P78317 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
RNF4P78317 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.69■□□□□ 0.1
RNF4P78317 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
RNF4P78317 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.69■□□□□ 0.1
RNF4P78317 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
RNF4P78317 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.69■□□□□ 0.1
RNF4P78317 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
RNF4P78317 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.69■□□□□ 0.1
RNF4P78317 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
RNF4P78317 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.69■□□□□ 0.1
RNF4P78317 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.69■□□□□ 0.1
RNF4P78317 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
RNF4P78317 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.69■□□□□ 0.1
RNF4P78317 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.69■□□□□ 0.1
RNF4P78317 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 KRT19P2-202ENST00000557173 1012 ntBASIC15.69■□□□□ 0.1
RNF4P78317 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.69■□□□□ 0.1
RNF4P78317 AC005412.3-201ENST00000580309 715 ntBASIC15.69■□□□□ 0.1
RNF4P78317 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.69■□□□□ 0.1
RNF4P78317 AL513190.1-201ENST00000621254 727 ntBASIC15.69■□□□□ 0.1
RNF4P78317 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
RNF4P78317 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
RNF4P78317 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.69■□□□□ 0.1
RNF4P78317 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.69■□□□□ 0.1
RNF4P78317 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 AP001094.4-201ENST00000579008 2176 ntBASIC15.69■□□□□ 0.1
RNF4P78317 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
RNF4P78317 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.69■□□□□ 0.1
RNF4P78317 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 KRT8P49-201ENST00000604166 1432 ntBASIC15.68■□□□□ 0.1
RNF4P78317 AC025580.3-201ENST00000617932 1424 ntBASIC15.68■□□□□ 0.1
RNF4P78317 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.68■□□□□ 0.1
RNF4P78317 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.68■□□□□ 0.1
RNF4P78317 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.68■□□□□ 0.1
RNF4P78317 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
RNF4P78317 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms