Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LIG3P49916 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.92■□□□□ 0.46
LIG3P49916 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC17.92■□□□□ 0.46
LIG3P49916 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.92■□□□□ 0.46
LIG3P49916 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.92■□□□□ 0.46
LIG3P49916 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LIG3P49916 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIG3P49916 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.91■□□□□ 0.46
LIG3P49916 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LIG3P49916 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LIG3P49916 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LIG3P49916 POM121L3P-201ENST00000419331 1163 ntBASIC17.91■□□□□ 0.46
LIG3P49916 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.91■□□□□ 0.46
LIG3P49916 AC096582.2-201ENST00000510860 516 ntBASIC17.91■□□□□ 0.46
LIG3P49916 DUTP2-201ENST00000519164 463 ntBASIC17.91■□□□□ 0.46
LIG3P49916 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.91■□□□□ 0.46
LIG3P49916 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.91■□□□□ 0.46
LIG3P49916 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LIG3P49916 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.91■□□□□ 0.46
LIG3P49916 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LIG3P49916 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.91■□□□□ 0.46
LIG3P49916 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIG3P49916 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
LIG3P49916 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.9■□□□□ 0.46
LIG3P49916 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.9■□□□□ 0.46
LIG3P49916 AC125634.1-201ENST00000438758 1403 ntBASIC17.9■□□□□ 0.46
LIG3P49916 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
LIG3P49916 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LIG3P49916 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
LIG3P49916 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.9■□□□□ 0.46
LIG3P49916 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
LIG3P49916 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LIG3P49916 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 TPM4P1-201ENST00000436100 807 ntBASIC17.9■□□□□ 0.46
LIG3P49916 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.9■□□□□ 0.46
LIG3P49916 KRT16P4-201ENST00000453883 522 ntBASIC17.9■□□□□ 0.46
LIG3P49916 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.9■□□□□ 0.46
LIG3P49916 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.9■□□□□ 0.46
LIG3P49916 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.9■□□□□ 0.46
LIG3P49916 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.9■□□□□ 0.46
LIG3P49916 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.9■□□□□ 0.46
LIG3P49916 RN7SL510P-201ENST00000581311 263 ntBASIC17.9■□□□□ 0.46
LIG3P49916 LINC01711-201ENST00000598340 967 ntBASIC17.9■□□□□ 0.46
LIG3P49916 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.9■□□□□ 0.46
LIG3P49916 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 AL138831.2-201ENST00000606564 490 ntBASIC17.9■□□□□ 0.46
LIG3P49916 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.9■□□□□ 0.46
LIG3P49916 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LIG3P49916 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.9■□□□□ 0.46
LIG3P49916 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LIG3P49916 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
LIG3P49916 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
LIG3P49916 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIG3P49916 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.9■□□□□ 0.46
LIG3P49916 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.46
LIG3P49916 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
LIG3P49916 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
LIG3P49916 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
LIG3P49916 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
LIG3P49916 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
LIG3P49916 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
LIG3P49916 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms