Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CTCFP49711 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC19.55■□□□□ 0.72
CTCFP49711 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC19.55■□□□□ 0.72
CTCFP49711 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC19.55■□□□□ 0.72
CTCFP49711 AC107918.2-201ENST00000530817 355 ntBASIC19.55■□□□□ 0.72
CTCFP49711 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.55■□□□□ 0.72
CTCFP49711 AC106872.11-201ENST00000605838 421 ntBASIC19.55■□□□□ 0.72
CTCFP49711 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTCFP49711 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CTCFP49711 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTCFP49711 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CTCFP49711 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CTCFP49711 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.55■□□□□ 0.72
CTCFP49711 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.55■□□□□ 0.72
CTCFP49711 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CTCFP49711 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CTCFP49711 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CTCFP49711 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CTCFP49711 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.55■□□□□ 0.72
CTCFP49711 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CTCFP49711 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 BTBD7P1-201ENST00000447253 1453 ntBASIC19.54■□□□□ 0.72
CTCFP49711 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.54■□□□□ 0.72
CTCFP49711 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.54■□□□□ 0.72
CTCFP49711 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CTCFP49711 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 STX1A-203ENST00000395155 783 ntTSL 2 BASIC19.54■□□□□ 0.72
CTCFP49711 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 CROCCP4-201ENST00000457096 498 ntBASIC19.54■□□□□ 0.72
CTCFP49711 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CTCFP49711 DOC2GP-202ENST00000514950 1163 ntBASIC19.54■□□□□ 0.72
CTCFP49711 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC19.54■□□□□ 0.72
CTCFP49711 MIR3615-201ENST00000581999 87 ntBASIC19.54■□□□□ 0.72
CTCFP49711 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.54■□□□□ 0.72
CTCFP49711 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CTCFP49711 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CTCFP49711 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CTCFP49711 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.54■□□□□ 0.72
CTCFP49711 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.54■□□□□ 0.72
CTCFP49711 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CTCFP49711 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.54■□□□□ 0.72
CTCFP49711 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.53■□□□□ 0.72
CTCFP49711 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CTCFP49711 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.53■□□□□ 0.72
CTCFP49711 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.53■□□□□ 0.72
CTCFP49711 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.53■□□□□ 0.72
CTCFP49711 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 AC020916.1-201ENST00000587762 1774 ntBASIC19.53■□□□□ 0.72
CTCFP49711 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC19.53■□□□□ 0.72
CTCFP49711 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CTCFP49711 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC19.53■□□□□ 0.72
CTCFP49711 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC19.53■□□□□ 0.72
CTCFP49711 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC19.53■□□□□ 0.72
CTCFP49711 CD81-207ENST00000481687 890 ntTSL 2 BASIC19.53■□□□□ 0.72
CTCFP49711 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC19.53■□□□□ 0.72
CTCFP49711 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC19.53■□□□□ 0.72
CTCFP49711 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC19.53■□□□□ 0.72
CTCFP49711 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
CTCFP49711 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CTCFP49711 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC19.53■□□□□ 0.72
CTCFP49711 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC19.53■□□□□ 0.72
CTCFP49711 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.53■□□□□ 0.72
CTCFP49711 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.53■□□□□ 0.72
CTCFP49711 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.53■□□□□ 0.72
CTCFP49711 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CTCFP49711 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.53■□□□□ 0.72
CTCFP49711 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CTCFP49711 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CTCFP49711 AC090164.3-201ENST00000610780 2143 ntBASIC19.52■□□□□ 0.72
CTCFP49711 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.52■□□□□ 0.72
CTCFP49711 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CTCFP49711 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
CTCFP49711 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CTCFP49711 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CTCFP49711 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC19.52■□□□□ 0.72
CTCFP49711 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CTCFP49711 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
CTCFP49711 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC19.52■□□□□ 0.72
CTCFP49711 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms