Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HTTP42858 PRYP6-201ENST00000514804 343 ntBASIC18.77■□□□□ 0.6
HTTP42858 EMC4-209ENST00000559421 497 ntTSL 2 BASIC18.77■□□□□ 0.6
HTTP42858 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC18.77■□□□□ 0.6
HTTP42858 AL021578.1-201ENST00000613646 709 ntBASIC18.77■□□□□ 0.6
HTTP42858 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HTTP42858 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.77■□□□□ 0.6
HTTP42858 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HTTP42858 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.77■□□□□ 0.6
HTTP42858 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HTTP42858 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.77■□□□□ 0.6
HTTP42858 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC18.77■□□□□ 0.6
HTTP42858 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC18.77■□□□□ 0.6
HTTP42858 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HTTP42858 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.77■□□□□ 0.59
HTTP42858 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HTTP42858 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.77■□□□□ 0.59
HTTP42858 AL671710.1-201ENST00000610245 2349 ntBASIC18.77■□□□□ 0.59
HTTP42858 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
HTTP42858 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
HTTP42858 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
HTTP42858 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HTTP42858 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
HTTP42858 AC099336.1-201ENST00000417053 1171 ntBASIC18.76■□□□□ 0.59
HTTP42858 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.76■□□□□ 0.59
HTTP42858 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
HTTP42858 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
HTTP42858 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
HTTP42858 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HTTP42858 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.76■□□□□ 0.59
HTTP42858 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
HTTP42858 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HTTP42858 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HTTP42858 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HTTP42858 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.76■□□□□ 0.59
HTTP42858 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.76■□□□□ 0.59
HTTP42858 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
HTTP42858 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.76■□□□□ 0.59
HTTP42858 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.76■□□□□ 0.59
HTTP42858 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.76■□□□□ 0.59
HTTP42858 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC18.76■□□□□ 0.59
HTTP42858 RNA5SP412-201ENST00000516234 123 ntBASIC18.76■□□□□ 0.59
HTTP42858 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.76■□□□□ 0.59
HTTP42858 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
HTTP42858 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.76■□□□□ 0.59
HTTP42858 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.76■□□□□ 0.59
HTTP42858 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
HTTP42858 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HTTP42858 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.76■□□□□ 0.59
HTTP42858 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC18.76■□□□□ 0.59
HTTP42858 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.76■□□□□ 0.59
HTTP42858 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.76■□□□□ 0.59
HTTP42858 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC18.76■□□□□ 0.59
HTTP42858 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC18.76■□□□□ 0.59
HTTP42858 NOC2LP1-202ENST00000452600 2235 ntBASIC18.76■□□□□ 0.59
HTTP42858 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HTTP42858 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HTTP42858 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HTTP42858 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HTTP42858 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HTTP42858 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.75■□□□□ 0.59
HTTP42858 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.75■□□□□ 0.59
HTTP42858 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC18.75■□□□□ 0.59
HTTP42858 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
HTTP42858 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HTTP42858 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HTTP42858 AC009113.1-201ENST00000570267 2443 ntBASIC18.75■□□□□ 0.59
HTTP42858 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HTTP42858 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.75■□□□□ 0.59
HTTP42858 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.75■□□□□ 0.59
HTTP42858 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HTTP42858 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.75■□□□□ 0.59
HTTP42858 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HTTP42858 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.75■□□□□ 0.59
HTTP42858 RN7SL828P-201ENST00000607615 303 ntBASIC18.75■□□□□ 0.59
HTTP42858 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC18.75■□□□□ 0.59
HTTP42858 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.75■□□□□ 0.59
HTTP42858 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HTTP42858 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HTTP42858 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.75■□□□□ 0.59
HTTP42858 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 AC108725.1-201ENST00000495472 409 ntBASIC18.74■□□□□ 0.59
HTTP42858 AC093726.1-201ENST00000608064 963 ntBASIC18.74■□□□□ 0.59
HTTP42858 AC133552.6-201ENST00000613406 534 ntBASIC18.74■□□□□ 0.59
HTTP42858 WFDC1-204ENST00000613603 549 ntBASIC18.74■□□□□ 0.59
HTTP42858 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.74■□□□□ 0.59
HTTP42858 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.74■□□□□ 0.59
HTTP42858 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HTTP42858 AC092506.1-202ENST00000401022 528 ntBASIC18.74■□□□□ 0.59
HTTP42858 GOLGA2P4-201ENST00000441462 777 ntBASIC18.74■□□□□ 0.59
HTTP42858 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC18.74■□□□□ 0.59
HTTP42858 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms