Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SOX3P41225 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.03■□□□□ 0.16
SOX3P41225 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SOX3P41225 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
SOX3P41225 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SOX3P41225 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.03■□□□□ 0.16
SOX3P41225 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.03■□□□□ 0.16
SOX3P41225 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.03■□□□□ 0.16
SOX3P41225 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
SOX3P41225 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.03■□□□□ 0.16
SOX3P41225 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.03■□□□□ 0.16
SOX3P41225 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.03■□□□□ 0.16
SOX3P41225 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.03■□□□□ 0.16
SOX3P41225 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.03■□□□□ 0.16
SOX3P41225 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.03■□□□□ 0.16
SOX3P41225 AC006557.2-201ENST00000592985 1240 ntBASIC16.03■□□□□ 0.16
SOX3P41225 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.03■□□□□ 0.16
SOX3P41225 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.03■□□□□ 0.16
SOX3P41225 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.03■□□□□ 0.16
SOX3P41225 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.03■□□□□ 0.16
SOX3P41225 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SOX3P41225 NCF1C-201ENST00000438382 1427 ntBASIC16.02■□□□□ 0.16
SOX3P41225 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SOX3P41225 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SOX3P41225 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SOX3P41225 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SOX3P41225 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SOX3P41225 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SOX3P41225 AC008741.2-201ENST00000612792 3115 ntBASIC16.02■□□□□ 0.16
SOX3P41225 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SOX3P41225 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SOX3P41225 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SOX3P41225 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SOX3P41225 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.02■□□□□ 0.16
SOX3P41225 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.02■□□□□ 0.16
SOX3P41225 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.02■□□□□ 0.16
SOX3P41225 AC098831.1-202ENST00000438821 336 ntBASIC16.02■□□□□ 0.16
SOX3P41225 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.02■□□□□ 0.16
SOX3P41225 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.02■□□□□ 0.16
SOX3P41225 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.02■□□□□ 0.16
SOX3P41225 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.02■□□□□ 0.16
SOX3P41225 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
SOX3P41225 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.02■□□□□ 0.16
SOX3P41225 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.02■□□□□ 0.16
SOX3P41225 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.02■□□□□ 0.16
SOX3P41225 AL139327.4-201ENST00000612362 153 ntBASIC16.02■□□□□ 0.16
SOX3P41225 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
SOX3P41225 AC046185.3-201ENST00000623228 1824 ntBASIC16.02■□□□□ 0.16
SOX3P41225 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.02■□□□□ 0.15
SOX3P41225 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SOX3P41225 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
SOX3P41225 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SOX3P41225 AC097637.2-201ENST00000624096 1997 ntBASIC16.02■□□□□ 0.15
SOX3P41225 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SOX3P41225 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.02■□□□□ 0.15
SOX3P41225 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SOX3P41225 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SOX3P41225 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SOX3P41225 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SOX3P41225 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.01■□□□□ 0.15
SOX3P41225 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.01■□□□□ 0.15
SOX3P41225 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SOX3P41225 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.01■□□□□ 0.15
SOX3P41225 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.01■□□□□ 0.15
SOX3P41225 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
SOX3P41225 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.01■□□□□ 0.15
SOX3P41225 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
SOX3P41225 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.01■□□□□ 0.15
SOX3P41225 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.01■□□□□ 0.15
SOX3P41225 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.01■□□□□ 0.15
SOX3P41225 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.01■□□□□ 0.15
SOX3P41225 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.01■□□□□ 0.15
SOX3P41225 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SOX3P41225 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
SOX3P41225 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SOX3P41225 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.01■□□□□ 0.15
SOX3P41225 AF228730.7-201ENST00000641842 219 ntBASIC16.01■□□□□ 0.15
SOX3P41225 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SOX3P41225 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms