Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 FAM58CP-201ENST00000435741 640 ntBASIC14.42□□□□□ -0.1
USF1P22415 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.42□□□□□ -0.1
USF1P22415 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.42□□□□□ -0.1
USF1P22415 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC14.42□□□□□ -0.1
USF1P22415 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
USF1P22415 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
USF1P22415 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
USF1P22415 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC14.42□□□□□ -0.1
USF1P22415 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
USF1P22415 HARS-201ENST00000307633 1780 ntTSL 2 BASIC14.42□□□□□ -0.1
USF1P22415 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC14.42□□□□□ -0.1
USF1P22415 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC14.42□□□□□ -0.1
USF1P22415 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
USF1P22415 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC14.41□□□□□ -0.1
USF1P22415 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 EML3-212ENST00000494176 2901 ntTSL 2 BASIC14.41□□□□□ -0.1
USF1P22415 EML3-216ENST00000529309 2909 ntTSL 2 BASIC14.41□□□□□ -0.1
USF1P22415 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.41□□□□□ -0.1
USF1P22415 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.41□□□□□ -0.1
USF1P22415 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
USF1P22415 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.41□□□□□ -0.1
USF1P22415 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
USF1P22415 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.41□□□□□ -0.1
USF1P22415 AL031432.2-201ENST00000566714 459 ntBASIC14.41□□□□□ -0.1
USF1P22415 AL928711.1-201ENST00000570165 459 ntBASIC14.41□□□□□ -0.1
USF1P22415 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
USF1P22415 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC14.41□□□□□ -0.1
USF1P22415 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
USF1P22415 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 FST-202ENST00000396947 2538 ntTSL 5 BASIC14.41□□□□□ -0.1
USF1P22415 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC14.41□□□□□ -0.1
USF1P22415 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
USF1P22415 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC14.41□□□□□ -0.1
USF1P22415 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.41□□□□□ -0.1
USF1P22415 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USF1P22415 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.41□□□□□ -0.1
USF1P22415 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC14.4□□□□□ -0.1
USF1P22415 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.4□□□□□ -0.1
USF1P22415 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
USF1P22415 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC14.4□□□□□ -0.1
USF1P22415 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.4□□□□□ -0.1
USF1P22415 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC14.4□□□□□ -0.1
USF1P22415 ACTG1P4-201ENST00000425123 1122 ntBASIC14.4□□□□□ -0.1
USF1P22415 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 CXCL1P1-201ENST00000502804 216 ntBASIC14.4□□□□□ -0.1
USF1P22415 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC14.4□□□□□ -0.1
USF1P22415 AP000344.2-201ENST00000512987 629 ntBASIC14.4□□□□□ -0.1
USF1P22415 OR7E47P-204ENST00000575924 449 ntBASIC14.4□□□□□ -0.1
USF1P22415 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.4□□□□□ -0.1
USF1P22415 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
USF1P22415 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
USF1P22415 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.4□□□□□ -0.1
USF1P22415 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.4□□□□□ -0.1
USF1P22415 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC14.4□□□□□ -0.1
USF1P22415 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
USF1P22415 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC14.4□□□□□ -0.1
USF1P22415 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
USF1P22415 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USF1P22415 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.11
USF1P22415 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC14.39□□□□□ -0.11
USF1P22415 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USF1P22415 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms