Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC17.32■□□□□ 0.36
VCANP13611 BOLA2P3-201ENST00000404566 256 ntBASIC17.32■□□□□ 0.36
VCANP13611 REEP1-202ENST00000453231 940 ntTSL 2 BASIC17.32■□□□□ 0.36
VCANP13611 AC091271.1-201ENST00000611877 1162 ntBASIC17.32■□□□□ 0.36
VCANP13611 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.32■□□□□ 0.36
VCANP13611 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.32■□□□□ 0.36
VCANP13611 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.32■□□□□ 0.36
VCANP13611 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCANP13611 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.31■□□□□ 0.36
VCANP13611 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCANP13611 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCANP13611 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.31■□□□□ 0.36
VCANP13611 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.31■□□□□ 0.36
VCANP13611 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.31■□□□□ 0.36
VCANP13611 AC093726.1-201ENST00000608064 963 ntBASIC17.31■□□□□ 0.36
VCANP13611 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.31■□□□□ 0.36
VCANP13611 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
VCANP13611 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCANP13611 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.31■□□□□ 0.36
VCANP13611 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCANP13611 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCANP13611 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.31■□□□□ 0.36
VCANP13611 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCANP13611 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.31■□□□□ 0.36
VCANP13611 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCANP13611 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.31■□□□□ 0.36
VCANP13611 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC17.31■□□□□ 0.36
VCANP13611 AC044860.1-202ENST00000559481 777 ntBASIC17.31■□□□□ 0.36
VCANP13611 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.31■□□□□ 0.36
VCANP13611 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCANP13611 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCANP13611 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
VCANP13611 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
VCANP13611 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.31■□□□□ 0.36
VCANP13611 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
VCANP13611 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCANP13611 MPV17-204ENST00000399052 749 ntTSL 4 BASIC17.31■□□□□ 0.36
VCANP13611 KLF2P4-201ENST00000451959 1225 ntBASIC17.31■□□□□ 0.36
VCANP13611 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.31■□□□□ 0.36
VCANP13611 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.31■□□□□ 0.36
VCANP13611 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
VCANP13611 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCANP13611 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCANP13611 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCANP13611 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCANP13611 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.3■□□□□ 0.36
VCANP13611 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCANP13611 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.3■□□□□ 0.36
VCANP13611 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCANP13611 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.3■□□□□ 0.36
VCANP13611 AC123567.1-201ENST00000548294 1261 ntBASIC17.3■□□□□ 0.36
VCANP13611 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VCANP13611 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.3■□□□□ 0.36
VCANP13611 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCANP13611 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VCANP13611 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VCANP13611 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC17.3■□□□□ 0.36
VCANP13611 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCANP13611 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
VCANP13611 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC17.3■□□□□ 0.36
VCANP13611 MIR3909-201ENST00000579518 119 ntBASIC17.3■□□□□ 0.36
VCANP13611 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCANP13611 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.3■□□□□ 0.36
VCANP13611 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.3■□□□□ 0.36
VCANP13611 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
VCANP13611 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.3■□□□□ 0.36
VCANP13611 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCANP13611 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCANP13611 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.3■□□□□ 0.36
VCANP13611 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 AC114501.2-201ENST00000439631 535 ntBASIC17.29■□□□□ 0.36
VCANP13611 AC114501.1-201ENST00000445949 172 ntBASIC17.29■□□□□ 0.36
VCANP13611 AC104306.2-201ENST00000451877 341 ntBASIC17.29■□□□□ 0.36
VCANP13611 PFN1P12-201ENST00000455938 534 ntBASIC17.29■□□□□ 0.36
VCANP13611 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC17.29■□□□□ 0.36
VCANP13611 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.29■□□□□ 0.36
VCANP13611 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC17.29■□□□□ 0.36
VCANP13611 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VCANP13611 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
VCANP13611 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VCANP13611 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.29■□□□□ 0.36
VCANP13611 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
VCANP13611 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VCANP13611 AC098818.2-201ENST00000564925 2320 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms