Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.11■□□□□ 0.33
VIMP08670 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VIMP08670 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.11■□□□□ 0.33
VIMP08670 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VIMP08670 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VIMP08670 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.11■□□□□ 0.33
VIMP08670 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.11■□□□□ 0.33
VIMP08670 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VIMP08670 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.11■□□□□ 0.33
VIMP08670 CCR12P-201ENST00000446203 998 ntBASIC17.11■□□□□ 0.33
VIMP08670 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.11■□□□□ 0.33
VIMP08670 RPPH1-201ENST00000516869 333 ntBASIC17.11■□□□□ 0.33
VIMP08670 AP005242.2-201ENST00000580065 1175 ntBASIC17.11■□□□□ 0.33
VIMP08670 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.11■□□□□ 0.33
VIMP08670 AC009154.2-201ENST00000621177 724 ntBASIC17.11■□□□□ 0.33
VIMP08670 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VIMP08670 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.11■□□□□ 0.33
VIMP08670 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VIMP08670 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.11■□□□□ 0.33
VIMP08670 AC006538.1-201ENST00000567905 1585 ntBASIC17.11■□□□□ 0.33
VIMP08670 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.1■□□□□ 0.33
VIMP08670 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
VIMP08670 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
VIMP08670 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.1■□□□□ 0.33
VIMP08670 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.1■□□□□ 0.33
VIMP08670 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.1■□□□□ 0.33
VIMP08670 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.1■□□□□ 0.33
VIMP08670 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VIMP08670 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
VIMP08670 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
VIMP08670 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.1■□□□□ 0.33
VIMP08670 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.1■□□□□ 0.33
VIMP08670 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.1■□□□□ 0.33
VIMP08670 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.1■□□□□ 0.33
VIMP08670 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.1■□□□□ 0.33
VIMP08670 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
VIMP08670 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VIMP08670 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.1■□□□□ 0.33
VIMP08670 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 AL645728.1-201ENST00000366221 2101 ntBASIC17.09■□□□□ 0.33
VIMP08670 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.09■□□□□ 0.33
VIMP08670 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.09■□□□□ 0.33
VIMP08670 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.09■□□□□ 0.33
VIMP08670 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.09■□□□□ 0.33
VIMP08670 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.09■□□□□ 0.33
VIMP08670 REXO1L10P-201ENST00000615707 1290 ntBASIC17.09■□□□□ 0.33
VIMP08670 REXO1L12P-201ENST00000622156 912 ntBASIC17.09■□□□□ 0.33
VIMP08670 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.09■□□□□ 0.33
VIMP08670 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VIMP08670 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms