Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 TSPY12P-201ENST00000421279 868 ntBASIC12.46□□□□□ -0.41
SMKR1H3BMG3 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 PENK-204ENST00000518770 863 ntTSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 NT5C-210ENST00000582160 860 ntTSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 AC004263.2-201ENST00000617183 678 ntBASIC12.46□□□□□ -0.41
SMKR1H3BMG3 AC009154.2-201ENST00000621177 724 ntBASIC12.46□□□□□ -0.41
SMKR1H3BMG3 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 EGFEM1P-202ENST00000431685 1563 ntBASIC12.46□□□□□ -0.42
SMKR1H3BMG3 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.46□□□□□ -0.42
SMKR1H3BMG3 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 VILL-207ENST00000465644 1857 ntTSL 5 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 AL390955.1-201ENST00000428694 934 ntBASIC12.45□□□□□ -0.42
SMKR1H3BMG3 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 AC113410.3-201ENST00000623366 203 ntBASIC12.45□□□□□ -0.42
SMKR1H3BMG3 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
SMKR1H3BMG3 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms