Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 AC026150.2-201ENST00000564693 1156 ntBASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
LIMD1Q9UGP4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
LIMD1Q9UGP4 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
LIMD1Q9UGP4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.71■□□□□ 0.42
LIMD1Q9UGP4 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMD1Q9UGP4 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 AC007274.1-201ENST00000439805 662 ntBASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMD1Q9UGP4 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 SPDYE7P-202ENST00000420373 878 ntBASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 AC097493.3-201ENST00000509725 367 ntBASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 LINC01225-203ENST00000563550 1244 ntBASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 MIR4515-201ENST00000584082 81 ntBASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMD1Q9UGP4 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms