Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 LINC01711-201ENST00000598340 967 ntBASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 AC008608.2-201ENST00000606089 416 ntBASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 AL391256.1-201ENST00000443260 1855 ntBASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 AL603756.1-201ENST00000606511 2163 ntBASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 FGFR3P6-201ENST00000457012 610 ntBASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 SCARNA2-201ENST00000458748 420 ntBASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 SART3-203ENST00000546611 1184 ntBASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 AC139887.3-201ENST00000568585 713 ntBASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 AL139424.1-201ENST00000607572 797 ntBASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 REXO1L6P-202ENST00000619970 1078 ntBASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS29Q9UBQ0 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 KRT8P49-201ENST00000604166 1432 ntBASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 PCDHB19P-201ENST00000570871 2371 ntBASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS29Q9UBQ0 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms