Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CMTM3Q96MX0 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CMTM3Q96MX0 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CMTM3Q96MX0 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CMTM3Q96MX0 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CMTM3Q96MX0 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CMTM3Q96MX0 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC14.66□□□□□ -0.06
CMTM3Q96MX0 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.66□□□□□ -0.06
CMTM3Q96MX0 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.66□□□□□ -0.06
CMTM3Q96MX0 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CMTM3Q96MX0 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
CMTM3Q96MX0 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 AL021920.2-201ENST00000624828 1351 ntBASIC14.65□□□□□ -0.06
CMTM3Q96MX0 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 AC079328.2-201ENST00000561241 3354 ntBASIC14.65□□□□□ -0.06
CMTM3Q96MX0 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 HLA-F-220ENST00000434407 884 ntBASIC14.65□□□□□ -0.06
CMTM3Q96MX0 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 AC142381.4-202ENST00000563973 229 ntBASIC14.65□□□□□ -0.06
CMTM3Q96MX0 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 AP000525.1-201ENST00000608286 694 ntBASIC14.65□□□□□ -0.06
CMTM3Q96MX0 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CMTM3Q96MX0 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.07
CMTM3Q96MX0 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 VPS72-207ENST00000640458 689 ntTSL 5 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 AC092850.2-201ENST00000623821 2697 ntBASIC14.64□□□□□ -0.07
CMTM3Q96MX0 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CMTM3Q96MX0 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms