Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 AC116353.5-201ENST00000638148 1699 ntBASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 PHGDH-209ENST00000641074 1780 ntBASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 PRKY-204ENST00000533551 1019 ntBASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 AL160286.2-201ENST00000567150 934 ntBASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 AC083880.1-201ENST00000608266 535 ntBASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 AC120498.8-201ENST00000614275 531 ntBASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 INO80E-214ENST00000620599 515 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28AQ8IWP9 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 CICP24-201ENST00000605464 2705 ntBASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 RHOD-202ENST00000532559 538 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 PNN-205ENST00000556530 601 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 AC008687.6-201ENST00000596318 630 ntBASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 AL357033.4-201ENST00000617703 1807 ntBASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC28AQ8IWP9 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms