Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.98■□□□□ 0.31
LDB1Q86U70 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.98■□□□□ 0.31
LDB1Q86U70 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.98■□□□□ 0.31
LDB1Q86U70 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.98■□□□□ 0.31
LDB1Q86U70 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.98■□□□□ 0.31
LDB1Q86U70 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.98■□□□□ 0.31
LDB1Q86U70 AC004706.3-202ENST00000621574 984 ntBASIC16.98■□□□□ 0.31
LDB1Q86U70 AL691432.3-201ENST00000621860 400 ntBASIC16.98■□□□□ 0.31
LDB1Q86U70 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LDB1Q86U70 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LDB1Q86U70 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
LDB1Q86U70 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LDB1Q86U70 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
LDB1Q86U70 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDB1Q86U70 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
LDB1Q86U70 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LDB1Q86U70 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LDB1Q86U70 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.97■□□□□ 0.31
LDB1Q86U70 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
LDB1Q86U70 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LDB1Q86U70 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB1Q86U70 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.97■□□□□ 0.31
LDB1Q86U70 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.97■□□□□ 0.31
LDB1Q86U70 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LDB1Q86U70 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB1Q86U70 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB1Q86U70 ELK2BP-201ENST00000415014 1224 ntBASIC16.97■□□□□ 0.31
LDB1Q86U70 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.97■□□□□ 0.31
LDB1Q86U70 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.97■□□□□ 0.31
LDB1Q86U70 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.97■□□□□ 0.31
LDB1Q86U70 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB1Q86U70 RN7SL510P-201ENST00000581311 263 ntBASIC16.97■□□□□ 0.31
LDB1Q86U70 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.97■□□□□ 0.31
LDB1Q86U70 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB1Q86U70 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB1Q86U70 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.97■□□□□ 0.31
LDB1Q86U70 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB1Q86U70 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB1Q86U70 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.96■□□□□ 0.31
LDB1Q86U70 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.96■□□□□ 0.31
LDB1Q86U70 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.96■□□□□ 0.31
LDB1Q86U70 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
LDB1Q86U70 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
LDB1Q86U70 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.96■□□□□ 0.31
LDB1Q86U70 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.96■□□□□ 0.31
LDB1Q86U70 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
LDB1Q86U70 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 PTCHD3P3-201ENST00000403073 906 ntBASIC16.96■□□□□ 0.31
LDB1Q86U70 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.96■□□□□ 0.31
LDB1Q86U70 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.96■□□□□ 0.31
LDB1Q86U70 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.96■□□□□ 0.31
LDB1Q86U70 HNRNPDP1-201ENST00000439535 754 ntBASIC16.96■□□□□ 0.31
LDB1Q86U70 RNPS1P1-201ENST00000507437 918 ntBASIC16.96■□□□□ 0.31
LDB1Q86U70 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.96■□□□□ 0.31
LDB1Q86U70 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.96■□□□□ 0.31
LDB1Q86U70 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.96■□□□□ 0.31
LDB1Q86U70 AC148477.8-201ENST00000624298 468 ntBASIC16.96■□□□□ 0.31
LDB1Q86U70 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.96■□□□□ 0.31
LDB1Q86U70 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
LDB1Q86U70 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
LDB1Q86U70 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.96■□□□□ 0.31
LDB1Q86U70 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
LDB1Q86U70 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.96■□□□□ 0.31
LDB1Q86U70 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.96■□□□□ 0.31
LDB1Q86U70 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB1Q86U70 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.96■□□□□ 0.3
LDB1Q86U70 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LDB1Q86U70 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
LDB1Q86U70 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
LDB1Q86U70 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LDB1Q86U70 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
LDB1Q86U70 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms