Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 RNU1-129P-201ENST00000384064 167 ntBASIC11.67□□□□□ -0.54
CSMD3Q7Z407 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 RPL37AP1-201ENST00000412502 279 ntBASIC11.67□□□□□ -0.54
CSMD3Q7Z407 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 U1.21-201ENST00000580816 167 ntBASIC11.67□□□□□ -0.54
CSMD3Q7Z407 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 MIR6775-201ENST00000617557 69 ntBASIC11.67□□□□□ -0.54
CSMD3Q7Z407 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC11.67□□□□□ -0.54
CSMD3Q7Z407 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 AC135586.1-201ENST00000539323 574 ntBASIC11.66□□□□□ -0.54
CSMD3Q7Z407 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 FAM8A2P-201ENST00000528813 1142 ntBASIC11.66□□□□□ -0.54
CSMD3Q7Z407 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CSMD3Q7Z407 AC131009.4-201ENST00000624048 1740 ntBASIC11.66□□□□□ -0.54
CSMD3Q7Z407 AC018470.1-201ENST00000624790 3129 ntBASIC11.66□□□□□ -0.54
CSMD3Q7Z407 FAM220BP-201ENST00000377689 816 ntBASIC11.65□□□□□ -0.54
CSMD3Q7Z407 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 STOM-203ENST00000538954 1257 ntTSL 5 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 GRAMD4P3-201ENST00000621665 1669 ntBASIC11.65□□□□□ -0.54
CSMD3Q7Z407 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 AC022210.1-201ENST00000449856 793 ntBASIC11.65□□□□□ -0.54
CSMD3Q7Z407 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 AL133215.2-201ENST00000609242 977 ntBASIC11.65□□□□□ -0.54
CSMD3Q7Z407 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CSMD3Q7Z407 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC11.65□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms