Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.76■□□□□ 0.27
LIMK1P53667 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.76■□□□□ 0.27
LIMK1P53667 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.76■□□□□ 0.27
LIMK1P53667 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
LIMK1P53667 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.76■□□□□ 0.27
LIMK1P53667 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
LIMK1P53667 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.76■□□□□ 0.27
LIMK1P53667 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
LIMK1P53667 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIMK1P53667 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMK1P53667 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMK1P53667 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMK1P53667 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.75■□□□□ 0.27
LIMK1P53667 AC138028.4-201ENST00000564984 1845 ntBASIC16.75■□□□□ 0.27
LIMK1P53667 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.75■□□□□ 0.27
LIMK1P53667 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIMK1P53667 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
LIMK1P53667 AC084018.2-201ENST00000613093 2607 ntBASIC16.75■□□□□ 0.27
LIMK1P53667 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIMK1P53667 MYCLP1-201ENST00000372451 1075 ntBASIC16.75■□□□□ 0.27
LIMK1P53667 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
LIMK1P53667 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
LIMK1P53667 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.75■□□□□ 0.27
LIMK1P53667 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMK1P53667 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.75■□□□□ 0.27
LIMK1P53667 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIMK1P53667 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.75■□□□□ 0.27
LIMK1P53667 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.75■□□□□ 0.27
LIMK1P53667 LINC01225-203ENST00000563550 1244 ntBASIC16.75■□□□□ 0.27
LIMK1P53667 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.75■□□□□ 0.27
LIMK1P53667 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
LIMK1P53667 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.75■□□□□ 0.27
LIMK1P53667 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.75■□□□□ 0.27
LIMK1P53667 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.75■□□□□ 0.27
LIMK1P53667 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMK1P53667 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.75■□□□□ 0.27
LIMK1P53667 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.75■□□□□ 0.27
LIMK1P53667 AC093677.2-201ENST00000600169 1863 ntBASIC16.75■□□□□ 0.27
LIMK1P53667 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.75■□□□□ 0.27
LIMK1P53667 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMK1P53667 BX276092.7-203ENST00000637198 1536 ntBASIC16.75■□□□□ 0.27
LIMK1P53667 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.75■□□□□ 0.27
LIMK1P53667 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
LIMK1P53667 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMK1P53667 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMK1P53667 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
LIMK1P53667 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
LIMK1P53667 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.74■□□□□ 0.27
LIMK1P53667 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMK1P53667 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMK1P53667 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.74■□□□□ 0.27
LIMK1P53667 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.74■□□□□ 0.27
LIMK1P53667 AC092580.3-201ENST00000430932 139 ntBASIC16.74■□□□□ 0.27
LIMK1P53667 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.74■□□□□ 0.27
LIMK1P53667 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMK1P53667 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.74■□□□□ 0.27
LIMK1P53667 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMK1P53667 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
LIMK1P53667 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.74■□□□□ 0.27
LIMK1P53667 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.74■□□□□ 0.27
LIMK1P53667 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.74■□□□□ 0.27
LIMK1P53667 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMK1P53667 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
LIMK1P53667 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LIMK1P53667 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMK1P53667 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.73■□□□□ 0.27
LIMK1P53667 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIMK1P53667 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.73■□□□□ 0.27
LIMK1P53667 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.73■□□□□ 0.27
LIMK1P53667 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIMK1P53667 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.73■□□□□ 0.27
LIMK1P53667 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
LIMK1P53667 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMK1P53667 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.73■□□□□ 0.27
LIMK1P53667 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIMK1P53667 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMK1P53667 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMK1P53667 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
LIMK1P53667 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMK1P53667 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMK1P53667 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.73■□□□□ 0.27
LIMK1P53667 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms