Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 HMGN1P19-201ENST00000436976 333 ntBASIC18.6■□□□□ 0.57
CLCN3P51790 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.6■□□□□ 0.57
CLCN3P51790 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.6■□□□□ 0.57
CLCN3P51790 RFPL4AP1-201ENST00000530883 850 ntBASIC18.6■□□□□ 0.57
CLCN3P51790 RARRES2P8-201ENST00000566335 367 ntBASIC18.6■□□□□ 0.57
CLCN3P51790 AL031055.1-201ENST00000606362 631 ntBASIC18.6■□□□□ 0.57
CLCN3P51790 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.6■□□□□ 0.57
CLCN3P51790 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.6■□□□□ 0.57
CLCN3P51790 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CLCN3P51790 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.6■□□□□ 0.57
CLCN3P51790 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCN3P51790 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.59■□□□□ 0.57
CLCN3P51790 AC139713.2-201ENST00000641328 2723 ntBASIC18.59■□□□□ 0.57
CLCN3P51790 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CLCN3P51790 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.59■□□□□ 0.57
CLCN3P51790 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.59■□□□□ 0.57
CLCN3P51790 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CLCN3P51790 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
CLCN3P51790 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.59■□□□□ 0.57
CLCN3P51790 RNU1-129P-201ENST00000384064 167 ntBASIC18.59■□□□□ 0.57
CLCN3P51790 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.59■□□□□ 0.57
CLCN3P51790 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.59■□□□□ 0.57
CLCN3P51790 AC023141.5-201ENST00000458585 616 ntBASIC18.59■□□□□ 0.57
CLCN3P51790 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.59■□□□□ 0.57
CLCN3P51790 AC079140.1-201ENST00000508039 487 ntBASIC18.59■□□□□ 0.57
CLCN3P51790 FAM86C2P-203ENST00000528684 1004 ntBASIC18.59■□□□□ 0.57
CLCN3P51790 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.59■□□□□ 0.57
CLCN3P51790 AC243562.1-201ENST00000560672 389 ntBASIC18.59■□□□□ 0.57
CLCN3P51790 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.59■□□□□ 0.57
CLCN3P51790 U1.21-201ENST00000580816 167 ntBASIC18.59■□□□□ 0.57
CLCN3P51790 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.59■□□□□ 0.57
CLCN3P51790 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.59■□□□□ 0.57
CLCN3P51790 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.59■□□□□ 0.57
CLCN3P51790 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.59■□□□□ 0.57
CLCN3P51790 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.59■□□□□ 0.57
CLCN3P51790 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CLCN3P51790 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.59■□□□□ 0.57
CLCN3P51790 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCN3P51790 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.59■□□□□ 0.57
CLCN3P51790 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.59■□□□□ 0.57
CLCN3P51790 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CLCN3P51790 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
CLCN3P51790 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CLCN3P51790 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLCN3P51790 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLCN3P51790 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
CLCN3P51790 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLCN3P51790 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLCN3P51790 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLCN3P51790 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLCN3P51790 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLCN3P51790 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.58■□□□□ 0.57
CLCN3P51790 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CLCN3P51790 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
CLCN3P51790 AC092068.3-201ENST00000587894 2016 ntBASIC18.58■□□□□ 0.56
CLCN3P51790 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
CLCN3P51790 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
CLCN3P51790 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.58■□□□□ 0.56
CLCN3P51790 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.58■□□□□ 0.56
CLCN3P51790 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.58■□□□□ 0.56
CLCN3P51790 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.58■□□□□ 0.56
CLCN3P51790 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.58■□□□□ 0.56
CLCN3P51790 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.58■□□□□ 0.56
CLCN3P51790 AC109635.5-201ENST00000533593 962 ntBASIC18.58■□□□□ 0.56
CLCN3P51790 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.58■□□□□ 0.56
CLCN3P51790 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.58■□□□□ 0.56
CLCN3P51790 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.58■□□□□ 0.56
CLCN3P51790 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CLCN3P51790 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.58■□□□□ 0.56
CLCN3P51790 AC106028.4-201ENST00000614509 607 ntBASIC18.58■□□□□ 0.56
CLCN3P51790 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLCN3P51790 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms