Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SOX3P41225 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.06■□□□□ 0.16
SOX3P41225 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.06■□□□□ 0.16
SOX3P41225 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SOX3P41225 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
SOX3P41225 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.05■□□□□ 0.16
SOX3P41225 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SOX3P41225 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
SOX3P41225 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.05■□□□□ 0.16
SOX3P41225 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.05■□□□□ 0.16
SOX3P41225 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
SOX3P41225 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.05■□□□□ 0.16
SOX3P41225 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.05■□□□□ 0.16
SOX3P41225 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.05■□□□□ 0.16
SOX3P41225 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
SOX3P41225 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.05■□□□□ 0.16
SOX3P41225 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.05■□□□□ 0.16
SOX3P41225 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.05■□□□□ 0.16
SOX3P41225 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SOX3P41225 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.05■□□□□ 0.16
SOX3P41225 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.05■□□□□ 0.16
SOX3P41225 AC092910.1-201ENST00000482027 1129 ntBASIC16.05■□□□□ 0.16
SOX3P41225 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.05■□□□□ 0.16
SOX3P41225 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.05■□□□□ 0.16
SOX3P41225 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.05■□□□□ 0.16
SOX3P41225 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SOX3P41225 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.05■□□□□ 0.16
SOX3P41225 OR6D1P-203ENST00000641209 4860 ntBASIC16.05■□□□□ 0.16
SOX3P41225 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SOX3P41225 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SOX3P41225 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
SOX3P41225 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.04■□□□□ 0.16
SOX3P41225 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SOX3P41225 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
SOX3P41225 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.04■□□□□ 0.16
SOX3P41225 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.04■□□□□ 0.16
SOX3P41225 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.04■□□□□ 0.16
SOX3P41225 SLC25A1P1-201ENST00000528351 927 ntBASIC16.04■□□□□ 0.16
SOX3P41225 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.04■□□□□ 0.16
SOX3P41225 AC105339.3-201ENST00000560043 636 ntBASIC16.04■□□□□ 0.16
SOX3P41225 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.04■□□□□ 0.16
SOX3P41225 AL589182.2-201ENST00000619332 1049 ntBASIC16.04■□□□□ 0.16
SOX3P41225 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.04■□□□□ 0.16
SOX3P41225 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.04■□□□□ 0.16
SOX3P41225 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.04■□□□□ 0.16
SOX3P41225 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.04■□□□□ 0.16
SOX3P41225 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.04■□□□□ 0.16
SOX3P41225 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
SOX3P41225 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SOX3P41225 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.04■□□□□ 0.16
SOX3P41225 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SOX3P41225 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 AP002414.3-201ENST00000589352 1468 ntBASIC16.03■□□□□ 0.16
SOX3P41225 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SOX3P41225 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SOX3P41225 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms