Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFC3P40938 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
RFC3P40938 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
RFC3P40938 SLC25A6P2-201ENST00000497974 877 ntBASIC15.58■□□□□ 0.08
RFC3P40938 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.58■□□□□ 0.08
RFC3P40938 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.58■□□□□ 0.08
RFC3P40938 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.58■□□□□ 0.08
RFC3P40938 C20orf181-201ENST00000623918 480 ntBASIC15.58■□□□□ 0.08
RFC3P40938 AC079781.4-201ENST00000641908 219 ntBASIC15.58■□□□□ 0.08
RFC3P40938 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RFC3P40938 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
RFC3P40938 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
RFC3P40938 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RFC3P40938 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFC3P40938 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFC3P40938 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFC3P40938 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFC3P40938 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFC3P40938 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFC3P40938 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.57■□□□□ 0.08
RFC3P40938 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.57■□□□□ 0.08
RFC3P40938 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
RFC3P40938 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
RFC3P40938 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
RFC3P40938 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.57■□□□□ 0.08
RFC3P40938 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
RFC3P40938 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.57■□□□□ 0.08
RFC3P40938 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.57■□□□□ 0.08
RFC3P40938 CEND1P1-201ENST00000451006 455 ntBASIC15.57■□□□□ 0.08
RFC3P40938 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 AC087163.2-201ENST00000457299 853 ntBASIC15.57■□□□□ 0.08
RFC3P40938 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.57■□□□□ 0.08
RFC3P40938 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.57■□□□□ 0.08
RFC3P40938 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.57■□□□□ 0.08
RFC3P40938 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.57■□□□□ 0.08
RFC3P40938 AC023141.13-201ENST00000604991 943 ntBASIC15.57■□□□□ 0.08
RFC3P40938 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.57■□□□□ 0.08
RFC3P40938 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.57■□□□□ 0.08
RFC3P40938 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
RFC3P40938 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.57■□□□□ 0.08
RFC3P40938 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
RFC3P40938 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFC3P40938 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC15.57■□□□□ 0.08
RFC3P40938 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.56■□□□□ 0.08
RFC3P40938 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
RFC3P40938 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.56■□□□□ 0.08
RFC3P40938 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.56■□□□□ 0.08
RFC3P40938 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.56■□□□□ 0.08
RFC3P40938 SLC25A6P5-201ENST00000435663 894 ntBASIC15.56■□□□□ 0.08
RFC3P40938 FAM58CP-201ENST00000435741 640 ntBASIC15.56■□□□□ 0.08
RFC3P40938 RHOQP3-201ENST00000437982 621 ntBASIC15.56■□□□□ 0.08
RFC3P40938 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.56■□□□□ 0.08
RFC3P40938 PAWRP1-201ENST00000451083 565 ntBASIC15.56■□□□□ 0.08
RFC3P40938 AL513480.1-201ENST00000451731 511 ntBASIC15.56■□□□□ 0.08
RFC3P40938 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.56■□□□□ 0.08
RFC3P40938 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
RFC3P40938 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.56■□□□□ 0.08
RFC3P40938 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.56■□□□□ 0.08
RFC3P40938 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
RFC3P40938 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.56■□□□□ 0.08
RFC3P40938 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.56■□□□□ 0.08
RFC3P40938 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFC3P40938 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.56■□□□□ 0.08
RFC3P40938 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
RFC3P40938 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms