Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
COL18A1P39060 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL18A1P39060 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC22.07■■□□□ 1.12
COL18A1P39060 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
COL18A1P39060 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC22.07■■□□□ 1.12
COL18A1P39060 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC22.07■■□□□ 1.12
COL18A1P39060 AC114501.2-201ENST00000439631 535 ntBASIC22.07■■□□□ 1.12
COL18A1P39060 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
COL18A1P39060 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC22.07■■□□□ 1.12
COL18A1P39060 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC22.07■■□□□ 1.12
COL18A1P39060 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC22.07■■□□□ 1.12
COL18A1P39060 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC22.07■■□□□ 1.12
COL18A1P39060 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
COL18A1P39060 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL18A1P39060 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC22.07■■□□□ 1.12
COL18A1P39060 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC22.06■■□□□ 1.12
COL18A1P39060 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC22.06■■□□□ 1.12
COL18A1P39060 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
COL18A1P39060 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC22.06■■□□□ 1.12
COL18A1P39060 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC22.06■■□□□ 1.12
COL18A1P39060 RAB35-202ENST00000534951 939 ntTSL 2 BASIC22.06■■□□□ 1.12
COL18A1P39060 AC017083.2-201ENST00000608069 979 ntBASIC22.06■■□□□ 1.12
COL18A1P39060 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC22.06■■□□□ 1.12
COL18A1P39060 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC22.06■■□□□ 1.12
COL18A1P39060 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
COL18A1P39060 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL18A1P39060 AC007541.1-201ENST00000570282 1469 ntBASIC22.05■■□□□ 1.12
COL18A1P39060 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
COL18A1P39060 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL18A1P39060 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
COL18A1P39060 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL18A1P39060 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL18A1P39060 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL18A1P39060 AL512384.1-201ENST00000406683 331 ntBASIC22.05■■□□□ 1.12
COL18A1P39060 AC112492.5-201ENST00000421897 457 ntBASIC22.05■■□□□ 1.12
COL18A1P39060 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC22.05■■□□□ 1.12
COL18A1P39060 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC22.05■■□□□ 1.12
COL18A1P39060 AC044860.1-202ENST00000559481 777 ntBASIC22.05■■□□□ 1.12
COL18A1P39060 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC22.05■■□□□ 1.12
COL18A1P39060 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC22.05■■□□□ 1.12
COL18A1P39060 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
COL18A1P39060 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL18A1P39060 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC22.05■■□□□ 1.12
COL18A1P39060 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL18A1P39060 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC22.05■■□□□ 1.12
COL18A1P39060 KRT8P12-202ENST00000472924 1397 ntBASIC22.05■■□□□ 1.12
COL18A1P39060 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL18A1P39060 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC22.05■■□□□ 1.12
COL18A1P39060 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL18A1P39060 SPDYE19P-201ENST00000338590 713 ntBASIC22.04■■□□□ 1.12
COL18A1P39060 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC22.04■■□□□ 1.12
COL18A1P39060 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC22.04■■□□□ 1.12
COL18A1P39060 SNX29P1-201ENST00000548357 1007 ntBASIC22.04■■□□□ 1.12
COL18A1P39060 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
COL18A1P39060 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC22.04■■□□□ 1.12
COL18A1P39060 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC22.04■■□□□ 1.12
COL18A1P39060 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC22.04■■□□□ 1.12
COL18A1P39060 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC22.04■■□□□ 1.12
COL18A1P39060 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC22.04■■□□□ 1.12
COL18A1P39060 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC22.04■■□□□ 1.12
COL18A1P39060 CD276-201ENST00000318424 2738 ntTSL 5 BASIC22.04■■□□□ 1.12
COL18A1P39060 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC22.04■■□□□ 1.12
COL18A1P39060 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 AC098614.1-201ENST00000368528 745 ntBASIC22.04■■□□□ 1.12
COL18A1P39060 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC22.04■■□□□ 1.12
COL18A1P39060 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
COL18A1P39060 AC093724.1-201ENST00000448659 1027 ntBASIC22.04■■□□□ 1.12
COL18A1P39060 AC093004.1-201ENST00000508850 424 ntBASIC22.04■■□□□ 1.12
COL18A1P39060 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
COL18A1P39060 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC22.04■■□□□ 1.12
COL18A1P39060 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL18A1P39060 COMP-202ENST00000425807 2292 ntTSL 2 BASIC22.04■■□□□ 1.12
COL18A1P39060 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms