Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
MSX1P28360 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.58■□□□□ 0.08
MSX1P28360 AC134684.3-201ENST00000641758 218 ntBASIC15.58■□□□□ 0.08
MSX1P28360 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX1P28360 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX1P28360 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX1P28360 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.58■□□□□ 0.08
MSX1P28360 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSX1P28360 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.58■□□□□ 0.08
MSX1P28360 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSX1P28360 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX1P28360 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.58■□□□□ 0.08
MSX1P28360 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSX1P28360 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX1P28360 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.58■□□□□ 0.08
MSX1P28360 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX1P28360 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
MSX1P28360 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.57■□□□□ 0.08
MSX1P28360 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
MSX1P28360 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
MSX1P28360 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.57■□□□□ 0.08
MSX1P28360 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
MSX1P28360 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.57■□□□□ 0.08
MSX1P28360 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.57■□□□□ 0.08
MSX1P28360 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
MSX1P28360 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
MSX1P28360 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.57■□□□□ 0.08
MSX1P28360 SERPINA7P1-201ENST00000443077 631 ntBASIC15.57■□□□□ 0.08
MSX1P28360 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.57■□□□□ 0.08
MSX1P28360 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.57■□□□□ 0.08
MSX1P28360 IGHV3-65-201ENST00000523210 341 ntBASIC15.57■□□□□ 0.08
MSX1P28360 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.57■□□□□ 0.08
MSX1P28360 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.57■□□□□ 0.08
MSX1P28360 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.57■□□□□ 0.08
MSX1P28360 MTDHP5-201ENST00000598980 586 ntBASIC15.57■□□□□ 0.08
MSX1P28360 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.57■□□□□ 0.08
MSX1P28360 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.57■□□□□ 0.08
MSX1P28360 AL021920.2-201ENST00000624828 1351 ntBASIC15.57■□□□□ 0.08
MSX1P28360 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.57■□□□□ 0.08
MSX1P28360 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
MSX1P28360 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.57■□□□□ 0.08
MSX1P28360 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
MSX1P28360 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.57■□□□□ 0.08
MSX1P28360 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
MSX1P28360 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX1P28360 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSX1P28360 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX1P28360 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSX1P28360 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.56■□□□□ 0.08
MSX1P28360 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSX1P28360 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX1P28360 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
MSX1P28360 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
MSX1P28360 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX1P28360 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.56■□□□□ 0.08
MSX1P28360 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX1P28360 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX1P28360 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX1P28360 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.56■□□□□ 0.08
MSX1P28360 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSX1P28360 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
MSX1P28360 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.56■□□□□ 0.08
MSX1P28360 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX1P28360 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.56■□□□□ 0.08
MSX1P28360 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.56■□□□□ 0.08
MSX1P28360 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
MSX1P28360 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX1P28360 TUBB8P12-201ENST00000308911 1335 ntBASIC15.56■□□□□ 0.08
MSX1P28360 TUBB7P-202ENST00000428444 1305 ntBASIC15.56■□□□□ 0.08
MSX1P28360 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSX1P28360 TUBB8P7-204ENST00000567960 1332 ntBASIC15.56■□□□□ 0.08
MSX1P28360 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX1P28360 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX1P28360 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX1P28360 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.56■□□□□ 0.08
MSX1P28360 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.56■□□□□ 0.08
MSX1P28360 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX1P28360 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX1P28360 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms