Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
COL8A1P27658 HMGA1P7-201ENST00000406908 502 ntBASIC14.8□□□□□ -0.04
COL8A1P27658 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC14.8□□□□□ -0.04
COL8A1P27658 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 RN7SL752P-201ENST00000463779 287 ntBASIC14.8□□□□□ -0.04
COL8A1P27658 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.8□□□□□ -0.04
COL8A1P27658 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
COL8A1P27658 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.8□□□□□ -0.04
COL8A1P27658 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
COL8A1P27658 RAB43P1-201ENST00000561790 589 ntBASIC14.8□□□□□ -0.04
COL8A1P27658 AC140912.1-201ENST00000577171 1054 ntBASIC14.8□□□□□ -0.04
COL8A1P27658 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.8□□□□□ -0.04
COL8A1P27658 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.8□□□□□ -0.04
COL8A1P27658 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 SPDYE12P-201ENST00000618416 771 ntBASIC14.8□□□□□ -0.04
COL8A1P27658 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
COL8A1P27658 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
COL8A1P27658 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
COL8A1P27658 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
COL8A1P27658 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
COL8A1P27658 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
COL8A1P27658 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC14.8□□□□□ -0.04
COL8A1P27658 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
COL8A1P27658 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
COL8A1P27658 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL8A1P27658 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC14.8□□□□□ -0.04
COL8A1P27658 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
COL8A1P27658 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
COL8A1P27658 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 DCD-201ENST00000293371 645 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL8A1P27658 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
COL8A1P27658 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC14.79□□□□□ -0.04
COL8A1P27658 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
COL8A1P27658 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.79□□□□□ -0.04
COL8A1P27658 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.79□□□□□ -0.04
COL8A1P27658 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL8A1P27658 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
COL8A1P27658 DUTP2-201ENST00000519164 463 ntBASIC14.79□□□□□ -0.04
COL8A1P27658 FAM8A2P-201ENST00000528813 1142 ntBASIC14.79□□□□□ -0.04
COL8A1P27658 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.79□□□□□ -0.04
COL8A1P27658 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.79□□□□□ -0.04
COL8A1P27658 MIR4515-201ENST00000584082 81 ntBASIC14.79□□□□□ -0.04
COL8A1P27658 MIR4259-201ENST00000584466 101 ntBASIC14.79□□□□□ -0.04
COL8A1P27658 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
COL8A1P27658 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 AL138828.2-201ENST00000615812 383 ntBASIC14.79□□□□□ -0.04
COL8A1P27658 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC14.79□□□□□ -0.04
COL8A1P27658 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
COL8A1P27658 AC009949.1-201ENST00000623048 1830 ntBASIC14.79□□□□□ -0.04
COL8A1P27658 AL033527.4-201ENST00000641026 673 ntBASIC14.79□□□□□ -0.04
COL8A1P27658 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL8A1P27658 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL8A1P27658 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC14.78□□□□□ -0.04
COL8A1P27658 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.78□□□□□ -0.04
COL8A1P27658 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC14.78□□□□□ -0.04
COL8A1P27658 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
COL8A1P27658 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL8A1P27658 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC14.78□□□□□ -0.04
COL8A1P27658 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
COL8A1P27658 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC14.78□□□□□ -0.04
COL8A1P27658 FAM86MP-201ENST00000340703 885 ntBASIC14.78□□□□□ -0.04
COL8A1P27658 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms