Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
MSH3P20585 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.94■□□□□ 0.3
MSH3P20585 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
MSH3P20585 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.94■□□□□ 0.3
MSH3P20585 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.94■□□□□ 0.3
MSH3P20585 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.94■□□□□ 0.3
MSH3P20585 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
MSH3P20585 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH3P20585 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.93■□□□□ 0.3
MSH3P20585 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.93■□□□□ 0.3
MSH3P20585 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
MSH3P20585 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
MSH3P20585 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.93■□□□□ 0.3
MSH3P20585 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
MSH3P20585 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.93■□□□□ 0.3
MSH3P20585 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 AL590627.1-203ENST00000421194 1026 ntBASIC16.93■□□□□ 0.3
MSH3P20585 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.93■□□□□ 0.3
MSH3P20585 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
MSH3P20585 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.93■□□□□ 0.3
MSH3P20585 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.93■□□□□ 0.3
MSH3P20585 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.93■□□□□ 0.3
MSH3P20585 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
MSH3P20585 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.93■□□□□ 0.3
MSH3P20585 GGTLC5P-201ENST00000617623 998 ntBASIC16.93■□□□□ 0.3
MSH3P20585 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.93■□□□□ 0.3
MSH3P20585 AF228730.7-201ENST00000641842 219 ntBASIC16.93■□□□□ 0.3
MSH3P20585 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.93■□□□□ 0.3
MSH3P20585 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.93■□□□□ 0.3
MSH3P20585 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
MSH3P20585 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
MSH3P20585 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.93■□□□□ 0.3
MSH3P20585 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
MSH3P20585 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH3P20585 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.92■□□□□ 0.3
MSH3P20585 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.92■□□□□ 0.3
MSH3P20585 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
MSH3P20585 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.92■□□□□ 0.3
MSH3P20585 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.92■□□□□ 0.3
MSH3P20585 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
MSH3P20585 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
MSH3P20585 AC008667.4-201ENST00000607370 168 ntBASIC16.92■□□□□ 0.3
MSH3P20585 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
MSH3P20585 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
MSH3P20585 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
MSH3P20585 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
MSH3P20585 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
MSH3P20585 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
MSH3P20585 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
MSH3P20585 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
MSH3P20585 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MSH3P20585 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms