Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.67■□□□□ 0.74
ERCC3P19447 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ERCC3P19447 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
ERCC3P19447 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.67■□□□□ 0.74
ERCC3P19447 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 AL355312.1-201ENST00000407115 2176 ntBASIC19.66■□□□□ 0.74
ERCC3P19447 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
ERCC3P19447 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.66■□□□□ 0.74
ERCC3P19447 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
ERCC3P19447 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.66■□□□□ 0.74
ERCC3P19447 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 AC023141.5-201ENST00000458585 616 ntBASIC19.66■□□□□ 0.74
ERCC3P19447 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.66■□□□□ 0.74
ERCC3P19447 AC109322.1-201ENST00000524499 1264 ntBASIC19.66■□□□□ 0.74
ERCC3P19447 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.66■□□□□ 0.74
ERCC3P19447 AC093512.1-201ENST00000617969 520 ntBASIC19.66■□□□□ 0.74
ERCC3P19447 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.66■□□□□ 0.74
ERCC3P19447 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
ERCC3P19447 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.66■□□□□ 0.74
ERCC3P19447 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ERCC3P19447 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.65■□□□□ 0.74
ERCC3P19447 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
ERCC3P19447 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.65■□□□□ 0.74
ERCC3P19447 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.65■□□□□ 0.74
ERCC3P19447 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.65■□□□□ 0.74
ERCC3P19447 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.65■□□□□ 0.74
ERCC3P19447 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.65■□□□□ 0.74
ERCC3P19447 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.65■□□□□ 0.74
ERCC3P19447 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.65■□□□□ 0.74
ERCC3P19447 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
ERCC3P19447 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ERCC3P19447 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.64■□□□□ 0.74
ERCC3P19447 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ERCC3P19447 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ERCC3P19447 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.64■□□□□ 0.73
ERCC3P19447 AC139713.2-201ENST00000641328 2723 ntBASIC19.64■□□□□ 0.73
ERCC3P19447 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC3P19447 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC3P19447 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
ERCC3P19447 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC3P19447 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
ERCC3P19447 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC3P19447 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC3P19447 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
ERCC3P19447 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC3P19447 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC3P19447 AC002056.1-201ENST00000395613 760 ntBASIC19.64■□□□□ 0.73
ERCC3P19447 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.64■□□□□ 0.73
ERCC3P19447 TIMM8BP1-201ENST00000452384 211 ntBASIC19.64■□□□□ 0.73
ERCC3P19447 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC19.64■□□□□ 0.73
ERCC3P19447 SPCS2P1-201ENST00000561636 679 ntBASIC19.64■□□□□ 0.73
ERCC3P19447 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
ERCC3P19447 LINC01451-201ENST00000623792 534 ntBASIC19.64■□□□□ 0.73
ERCC3P19447 LINC00628-201ENST00000628516 1289 ntBASIC19.64■□□□□ 0.73
ERCC3P19447 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC3P19447 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC3P19447 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.64■□□□□ 0.73
ERCC3P19447 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.64■□□□□ 0.73
ERCC3P19447 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
ERCC3P19447 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.64■□□□□ 0.73
ERCC3P19447 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.64■□□□□ 0.73
ERCC3P19447 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC3P19447 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.64■□□□□ 0.73
ERCC3P19447 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC3P19447 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
ERCC3P19447 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ERCC3P19447 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC3P19447 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC3P19447 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC3P19447 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
ERCC3P19447 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ERCC3P19447 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.63■□□□□ 0.73
ERCC3P19447 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms