Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.48■□□□□ 0.23
HOXC4P09017 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.48■□□□□ 0.23
HOXC4P09017 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.48■□□□□ 0.23
HOXC4P09017 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.48■□□□□ 0.23
HOXC4P09017 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.48■□□□□ 0.23
HOXC4P09017 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HOXC4P09017 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
HOXC4P09017 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.48■□□□□ 0.23
HOXC4P09017 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 AC005237.2-201ENST00000434368 219 ntBASIC16.48■□□□□ 0.23
HOXC4P09017 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.48■□□□□ 0.23
HOXC4P09017 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.48■□□□□ 0.23
HOXC4P09017 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HOXC4P09017 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.48■□□□□ 0.23
HOXC4P09017 AC027796.2-201ENST00000575326 344 ntBASIC16.48■□□□□ 0.23
HOXC4P09017 AC008267.7-201ENST00000624570 1194 ntBASIC16.48■□□□□ 0.23
HOXC4P09017 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
HOXC4P09017 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.48■□□□□ 0.23
HOXC4P09017 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
HOXC4P09017 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HOXC4P09017 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.48■□□□□ 0.23
HOXC4P09017 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HOXC4P09017 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
HOXC4P09017 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.47■□□□□ 0.23
HOXC4P09017 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.47■□□□□ 0.23
HOXC4P09017 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 KRT8P39-201ENST00000396270 1433 ntBASIC16.47■□□□□ 0.23
HOXC4P09017 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
HOXC4P09017 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
HOXC4P09017 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
HOXC4P09017 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.47■□□□□ 0.23
HOXC4P09017 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.47■□□□□ 0.23
HOXC4P09017 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.47■□□□□ 0.23
HOXC4P09017 AL512356.2-201ENST00000546955 174 ntBASIC16.47■□□□□ 0.23
HOXC4P09017 AC025678.2-201ENST00000562061 970 ntBASIC16.47■□□□□ 0.23
HOXC4P09017 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.47■□□□□ 0.23
HOXC4P09017 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.47■□□□□ 0.23
HOXC4P09017 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.47■□□□□ 0.23
HOXC4P09017 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.47■□□□□ 0.23
HOXC4P09017 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.47■□□□□ 0.23
HOXC4P09017 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HOXC4P09017 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.46■□□□□ 0.23
HOXC4P09017 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.46■□□□□ 0.23
HOXC4P09017 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.46■□□□□ 0.23
HOXC4P09017 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.46■□□□□ 0.23
HOXC4P09017 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HOXC4P09017 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HOXC4P09017 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
HOXC4P09017 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HOXC4P09017 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HOXC4P09017 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HOXC4P09017 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HOXC4P09017 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HOXC4P09017 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HOXC4P09017 MIR346-201ENST00000362234 95 ntBASIC16.46■□□□□ 0.23
HOXC4P09017 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.46■□□□□ 0.23
HOXC4P09017 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.46■□□□□ 0.23
HOXC4P09017 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.46■□□□□ 0.23
HOXC4P09017 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.46■□□□□ 0.23
HOXC4P09017 AC069335.1-201ENST00000489972 472 ntBASIC16.46■□□□□ 0.23
HOXC4P09017 IGHV3-62-201ENST00000520057 340 ntBASIC16.46■□□□□ 0.23
HOXC4P09017 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.46■□□□□ 0.23
HOXC4P09017 RFPL4AP1-201ENST00000530883 850 ntBASIC16.46■□□□□ 0.23
HOXC4P09017 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.46■□□□□ 0.23
HOXC4P09017 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.46■□□□□ 0.23
HOXC4P09017 AC015911.4-201ENST00000588022 1070 ntBASIC16.46■□□□□ 0.23
HOXC4P09017 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.46■□□□□ 0.23
HOXC4P09017 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.46■□□□□ 0.23
HOXC4P09017 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HOXC4P09017 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms